CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-2 OS=Archaeoglobus fulgidus GN=sucC2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 814
            + +HEYQ  ++ +K+GI V +G    SV++V+   +++     ++V+KSQ+L GGRG      G+K    +   EE  + A +M G +L       +G IV K+Y+ E + +  EMY  + +DR   G   I  S GG  IE++A K+P  I ++ ++   G+ D
Sbjct:    1 MRLHEYQAKQIFSKHGIRVARGELATSVEDVRGIAEEL---GGKVVLKSQVLVGGRGKA---GGIKKAYSV---EEAVEKAKEMFGSVL-------KGHIVEKIYVEEMIEVQREMYAGLTIDRANKGIAAILSSVGGMDIEEIAVKHPEKIARIAVNPKWGLWD 149          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PARUW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Protochlamydia amoebophila (strain UWE25) GN=sucC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 47/158 (29.75%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 790
            +N HE+Q  +++ KYGI VP     +S  EV++  +      +  ++K Q+ AGGRG         GGV +    +E+ + + +++G+ ++ +QTGP G I  +V +   + +  E Y  I ++R+ A  ++I    GG +IE +A + PN ++ +PI
Sbjct:    1 MNTHEFQAKQILRKYGIPVPDFYIASSSKEVEEIIKQY--QLQSAIIKVQVHAGGRGKA-------GGVKLATNPQEILEFSQELIGKKIINEQTGPSGMISHQVLISPAILIKKEFYLGITINRELASRVLIASPIGGVNIEKIAHEQPNQLLMLPI 149          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_XANCB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain B100) GN=sucC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +N HEYQ  +L+A+YGI VP G   ++ DE  +    +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      V+ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTVTYIASSEGGVEIEQVAAETPELIHSLNVDFVEGV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PYRIL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=sucC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 50/176 (28.41%), Postives = 92/176 (52.27%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + +HEY+  EL  +YG+ +P G    + DEV+K  +++      +V+K+Q++  GRG         GG+ I +  EE  +L+ KM G  +       +G +V K+Y+ + + +  EMY ++++DR +   + +    GG  IE++A+  P  I KV +D   G+ D     ++  L
Sbjct:    1 MKLHEYEAKELFLRYGVKIPPGKLALTPDEVRKIAEEI---GTPVVLKAQVVVAGRGKA-------GGIKIAQTPEEAYELSKKMFGMNI-------KGLVVRKLYVTKYVEVEREMYLSLIIDRASRRYLFLASPIGGVDIEEIAKTSPEKIKKVYVDPSIGLRDYHIRSIISWL 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLFF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydophila felis (strain Fe/C-56) GN=sucC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 54/159 (33.96%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLA--GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 790
            +++HEYQ  +L++ Y I +P    V+SV+E +   +++  +    VVK Q+ AGGRG        K G  I+ K   E LA  GK+L     + QT  +   V KV +   +++ +E Y A+++DRK   P I+    GG  IE++A+KYP+ ++ VP+
Sbjct:    1 MHLHEYQAKDLLSSYDIAIPPYRIVSSVEEGELVLRELGINAG--VVKVQVHAGGRG--------KNGGVIIAKSSSEILAAIGKLLKMRFESNQTSGESLPVEKVLITPLVNIASEYYLAVIMDRKNRCPAIMLSKAGGMDIEEVAQKYPDQLLTVPL 149          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_XANOR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae GN=sucC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +N HEYQ  +L+A+YGI VP G   A+ DE       +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      ++ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPSGKVAATPDEAVDVATSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAAAKMLGTKMSTYQTAGVELPINLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHALNVDFVEGV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_XANOP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=sucC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +N HEYQ  +L+A+YGI VP G   A+ DE       +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      ++ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPSGKVAATPDEAVDVATSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAAAKMLGTKMSTYQTAGVELPINLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHALNVDFVEGV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_XANOM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=sucC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +N HEYQ  +L+A+YGI VP G   A+ DE       +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      ++ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPSGKVAATPDEAVDVATSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAAAKMLGTKMSTYQTAGVELPINLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHALNVDFVEGV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_XANCP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris GN=sucC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +N HEYQ  +L+A+YGI VP G   ++ DE  +    +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      V+ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_XANC8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sucC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +N HEYQ  +L+A+YGI VP G   ++ DE  +    +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      V+ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGV 155          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC2_ARCFU6.316e-1732.12Succinyl-CoA ligase [ADP-forming] subunit beta-2 O... [more]
SUCC_PARUW1.077e-1629.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANCB1.407e-1634.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PYRIL1.407e-1628.41Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLFF1.407e-1633.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOR1.838e-1634.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOP1.838e-1634.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOM1.838e-1634.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANCP1.838e-1634.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANC81.838e-1634.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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