CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia trachomatis GN=sucC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 790
            +++HEYQ  +L+  Y + +P      SV EV+ A Q      K  VVK+Q+ AGGRG         GGV I    E++   A K+L     + QT      ++KV +   + + +E Y AI++DRK   P+I+    GG  IE++AEK P+ ++K+ +
Sbjct:    1 MHLHEYQAKDLLTAYQLPIPPYHVATSVPEVETAIQA--EQWKAGVVKAQVHAGGRGKN-------GGVVIAHSPEDLLAAADKLLHMQFSSNQTAGLSLPINKVLISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTL 149          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=sucC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 790
            +++HEYQ  +L+  Y + +P      SV EV+ A Q      K  VVK+Q+ AGGRG         GGV I    E++   A K+L     + QT      ++KV +   + + +E Y AI++DRK   P+I+    GG  IE++AEK P+ ++K+ +
Sbjct:    1 MHLHEYQAKDLLTAYQLPIPPYHVATSVPEVETAIQA--EQWKAGVVKAQVHAGGRGKN-------GGVVIAHSPEDLLAAADKLLHMQFSSNQTAGLSLPINKVLISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTL 149          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_THETH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thermus thermophilus GN=sucC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            +N+HEYQ  E++A+YG+ VP G    + +E K+  ++     K +V+K+Q+  GGRG         GGV +    +E  + A  +LG  +       +G  V KV + E + +  E Y  ++LDR     +++   +GG  IE++A + P  I K  ID   G    +A ++V
Sbjct:    1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF---GKRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMV 156          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HERA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=sucC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 52/172 (30.23%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGK-MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + +HEYQ  +++A+YGI V  G   A+ +EV+K  + +      + VK+Q+  GGRG         GG+ +         AGK +LG  +       +G  V KV + E ++   E+Y  ++LDR T   ++I  S+GG  IE++A+  P+ I+K+  D   G+    A ++
Sbjct:    1 MKLHEYQARDIVARYGIPVTGGGVAATAEEVQKVAEQI---GGPVAVKAQVHVGGRGKA-------GGIKLANTPAEAFDAGKAILGMDI-------KGLTVEKVLVAEAITFEKEIYLGVILDRATKRVVLIASSEGGVEIEEVAKINPDAIIKLAADPLLGLQPYQAQEL 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RUBXD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=sucC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 45/164 (27.44%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            ++++E+QG EL+ ++G+    G+   + +E ++A + +      + VK+Q+L GGRG         GG+ + +  EE E+ A ++LG  +       +G  V ++ +     +  E+Y + M+DR++  P+I+  ++GG  IE++AE+ P  IV++ +D   G+
Sbjct:    1 MDLYEHQGKELLGRFGLRTLPGVVATTPEEARRAAERL---GGTVAVKAQVLTGGRGKA-------GGIKVAESPEEAEEAARRILGMDI-------RGHTVRRLLIESGADIERELYLSAMVDRESRRPLILFSTEGGVDIEEVAERSPGSIVRLHVDPLVGL 147          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ROSCS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=sucC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.720e-14
Identity = 50/176 (28.41%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + +HEYQ  +++A+YG+ V  G    +  E +   + +      +VVK+Q+  GGRG         GGV +    E+ E +AG++LG  +       +G  V KV + E ++   E+Y   ++DR +   +++  ++GG  IE++A   P  IVKV      G+ D  A  +  G+
Sbjct:    1 MKLHEYQARDILARYGVPVTGGGVATTPAEARAIAEQI---GGRVVVKAQVFVGGRGKA-------GGVKLADTPEQAEQVAGQILGMNI-------KGLTVEKVLVAEAITYEREIYLGAIMDRASRRIVMMASAEGGVEIEEVARTNPEAIVKVAAHPMLGLLDFQARDLAYGI 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PROAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Propionibacterium acnes GN=sucC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.720e-14
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            ++++EYQ  +L  K+G+ V +G+   + ++  +A   +      + VK+Q+  GGRG         GGV I K   E  + A  +LG  +       +G  V KV + E   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KVP+D  +G+ D  A +++
Sbjct:    1 MDLYEYQARDLFEKHGVPVLRGIVAETPEQASEAAAKL--GTPVVAVKAQVKVGGRGKA-------GGVKIAKSAAEAAERAEAILGMDI-------KGHTVHKVMVAEGADIAEEYYFSILLDRGERRYLAMCSREGGMDIETLAKERPEALAKVPVDPIDGVDDAKAREIL 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLAB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydophila abortus GN=sucC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.720e-14
Identity = 50/161 (31.06%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 799
            +++HEYQ  +L+  Y I +P     +SV+E +    ++  +    VVK Q+ AGGRG         GGV + K  EE+     ++L    V+ QT  +   V KV +   +++  E Y A+++DRK   P I+    GG  IE++A+KYP+  + + +  F
Sbjct:    1 MHLHEYQAKDLLTSYAIPMPPYRVASSVEEGRHTLNELGINAG--VVKVQVHAGGRGKN-------GGVIVAKSPEEILAAVDQLLHMRFVSNQTSGEALPVEKVLITPLVNIAAEYYLAVIMDRKNRCPTIMLSKAGGVDIEEVAQKYPDQQLTISLTPF 152          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_KOCRD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=sucC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.934e-14
Identity = 50/174 (28.74%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838
            +++ EYQ  +L  K+G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  EE  + A ++LG  +       +G  V +V + +   +  E YF+++LDR     + +   +GG  IE LA + P+ + +V +   +GIT+  A ++V+
Sbjct:    1 MDLFEYQARDLFEKHGVPVLAGIVATTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTPEEAYEYAQQILGMDI-------KGHTVHRVMIAQGADIAEEYYFSVLLDRANRSYLAMCSVEGGMEIEQLAVERPDALARVDVSPADGITEAKAREIVE 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLAD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + +HEYQ  +L+A+YGI V  G    +  E     + +      +VVK+Q+  GGRG         GGV + +   E E +AG++LG  +       +G  V KV + E +S   E+Y + +LDR +    +I  ++GG  IE++A+  P+ IVK+      G+ D  A ++
Sbjct:    1 MKLHEYQARDLLARYGIPVTGGGVAVTPAEAHAIAEQI---GGPVVVKAQVHVGGRGKA-------GGVKLAQTPAEAEQVAGQILGMNI-------KGLTVEKVLVAEAISYERELYLSAILDRGSKRITMIASAEGGVEIEEVAKTNPSAIVKIAAHPTMGLLDFQAREL 155          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_CHLTR4.526e-1533.54Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLTA4.526e-1533.54Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_THETH5.912e-1530.06Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HERA25.912e-1530.23Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RUBXD7.721e-1527.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ROSCS1.720e-1428.41Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PROAC1.720e-1429.48Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLAB1.720e-1431.06Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_KOCRD2.934e-1428.74Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLAD3.832e-1430.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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