CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ROSS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Roseiflexus sp. (strain RS-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 50/176 (28.41%), Postives = 87/176 (49.43%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + +HEYQ  +++A+YGI V  G    +  E +   + +      +VVK+Q+  GGRG         GGV +    E+ E +A ++LG  +       +G  V KV + E ++   E+Y   ++DR +   +++  ++GG  IE++A   P  IVKV      G+ D  A  +  G+
Sbjct:    1 MKLHEYQARDILARYGIPVTGGGVATTPAEARTIAEQI---GGRVVVKAQVFVGGRGKA-------GGVKLADTPEQAEQVASQILGMNI-------KGLTVEKVLVAEAITYEREIYLGAIMDRASRRIVMMASAEGGVEIEEVARTNPEAIVKVAAHPMMGLLDFQARDLAYGI 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_NOCSJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nocardioides sp. (strain BAA-499 / JS614) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 53/173 (30.64%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            +++ EYQ  EL AK+ + V  G+   + DE + A + +      +VVK+Q+ AGGRG         GGV + K  EE    A  +LG  +       +G  V++V +    S+  E YF+ +LDR     + I   +GG  IE++A+  P+ + ++PID   G+ +  A ++V
Sbjct:    1 MDLMEYQAKELFAKHDVPVTLGIVAHTPDEAQAAAEQL----GVVVVKAQVKAGGRGKA-------GGVKLAKTPEEARTHAEAILGMEI-------KGLRVNRVLIAPAASIEEEYYFSFLLDRANRRYLCIASVEGGVEIEEVAKTNPDAVRQIPIDPGAGVDEAKAREIV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLSY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKG-LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + +HEYQ  +L+A++GI V  G +AV  V+    A +   P    +VVK+Q+  GGRG         GGV + +   E E +A ++LG  +       +G  V KV + E +S   E+Y + +LDR +   ++I  ++GG  IE++A+  P+ I+K+P     G+ D  A ++
Sbjct:    1 MKLHEYQARDLLARFGIPVTGGGVAVTPVEARTIAAEIGGP----VVVKAQVHVGGRGKA-------GGVKLAQTPTEAEQVARQILGMNI-------KGLTVEKVLVAEAVSYKRELYLSAILDRGSKRVMMIASAEGGVEIEEVAKTNPDAIIKIPAHPTMGLLDFQAREL 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLAA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKG-LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + +HEYQ  +L+A++GI V  G +AV  V+    A +   P    +VVK+Q+  GGRG         GGV + +   E E +A ++LG  +       +G  V KV + E +S   E+Y + +LDR +   ++I  ++GG  IE++A+  P+ I+K+P     G+ D  A ++
Sbjct:    1 MKLHEYQARDLLARFGIPVTGGGVAVTPVEARTIAAEIGGP----VVVKAQVHVGGRGKA-------GGVKLAQTPTEAEQVARQILGMNI-------KGLTVEKVLVAEAVSYKRELYLSAILDRGSKRVMMIASAEGGVEIEEVAKTNPDAIIKIPAHPTMGLLDFQAREL 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_NATPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.536e-14
Identity = 51/172 (29.65%), Postives = 90/172 (52.33%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 829
            + +HEYQ   + A  GI VP+    ++VDE  +A  D+ +P    + +K+Q+  GGRG         GG+ +V+  +E  + A ++LG  L       +G  V +V +   +   +E+Y  + +DR    P+ +  ++GG +IE++AE+ P+ IV+  ID   G+    A K
Sbjct:    1 MKLHEYQAKGVFADAGIPVPESTLASTVDEAVEAADDIGYP----VAIKAQVQVGGRGKA-------GGIKLVENADEAREAADEILGMDL-------KGLHVDRVLVEAAVDFTDELYVGVTMDRAAGKPVAMVSTRGGVNIEEVAEEDPDAIVREHIDPAFGMHPFQARK 154          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC2_STRCO (Succinyl-CoA ligase [ADP-forming] subunit beta-2 OS=Streptomyces coelicolor GN=sucC2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.536e-14
Identity = 49/174 (28.16%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838
            ++++E+Q  EL  ++GI VP+     S +  ++  + +       VVK+Q+  GGRG         GGV +     E E+ A  +LG  +       +G  V  V L E   +  E Y + +LDR + G + I  ++GGT IE++A + P  + ++P+D   G+    A ++ D
Sbjct:    1 MDLYEHQARELFKEHGIVVPRAEVTDSPERAREIARAL---GGRAVVKAQVKTGGRGKA-------GGVRLAADPAEAEEAARHILGMDI-------RGHTVDTVMLAEPCEIEREFYVSYVLDRASGGFLAIASAEGGTEIEEVAARRPEAVARIPVDPATGVHTATAVRIAD 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLMU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia muridarum GN=sucC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 790
            +++HEYQ  +L+  Y + +P      S+ E + A Q      +  VVK+Q+ AGGRG         GGV + +  E++     ++L     + QT      V+KV +   + +  E Y AI++DRK   P+I+    GG  IE++AEK P++++K+ +
Sbjct:    1 MHLHEYQAKDLLTSYQLPIPPYHVATSLSEAEVAIQA--EQWRSGVVKAQVHAGGRGKN-------GGVIVARSPEDLLAATDRLLHMQFSSNQTAGLSLPVNKVLISPLVEIALEYYIAIVIDRKHRCPVIMLSKSGGIDIEEIAEKQPDLLLKIAL 149          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CORGL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Corynebacterium glutamicum GN=sucC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 49/173 (28.32%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            +++ EYQ  +L   +G+ V KG+  ++ +  +KA +++       VVK+Q+  GGRG         GGV +     +  D A  +LG  +       +G  V++V + +   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KV +D   GI ++ A ++V
Sbjct:    1 MDLFEYQARDLFETHGVPVLKGIVASTPEAARKAAEEI---GGLTVVKAQVKVGGRGKA-------GGVRVAPTSAQAFDAADAILGMDI-------KGHTVNQVMVAQGADIAEEYYFSILLDRANRSYLAMCSVEGGMEIEILAKEKPEALAKVEVDPLTGIDEDKAREIV 156          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_METTH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanobacterium thermoautotrophicum GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV---PIDVF 799
            +  +EY   E+    GI+ P+G    + +E ++   ++  D   + VKSQ+L GGRG         GG+       V ++ G +L   +       +G+ V KV + EK+ +  E+Y + ++DR    P+I+  ++GG  IE+LA + P  IV+    P+D F
Sbjct:    1 MKFYEYSAKEIFRAEGISTPRGGVAETPEEAERIAAELGCD---VAVKSQVLTGGRGKA-------GGIRFASPSGVAEVTGDLLSSEV-------RGETVEKVLIEEKIPIDRELYVSAVIDRTAKMPLIMASAEGGVDIEELAARSPEKIVRYHINPLDEF 146          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HALLT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 50/174 (28.74%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            + +HE+Q   + A  GI VP      +VDE   A  ++ +P      +K+Q+  GGRG         GG+ I   ++E E  A ++LG  L       +G  V ++ + + +  V+E+Y  + +DR    P+++  ++GG +IE++AE+ P+ I +  +D   G+    A KVV
Sbjct:    1 MKLHEHQAKTIFADAGIPVPDSRLATTVDEALDAVDEIGYP----AAIKAQVHVGGRGKA-------GGIKIATDRDEAEQYAEEILGMDL-------KGYTVDQILVEQGVDFVDELYVGVTMDRGEGQPVLMVSTEGGVNIEEVAEENPDAIAREHVDPAFGLHPYQARKVV 156          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ROSS15.005e-1428.41Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NOCSJ5.005e-1430.64Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLSY5.005e-1431.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLAA5.005e-1431.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NATPD6.536e-1429.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC2_STRCO6.536e-1428.16Succinyl-CoA ligase [ADP-forming] subunit beta-2 O... [more]
SUCC_CHLMU8.537e-1430.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CORGL1.456e-1328.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METTH1.902e-1328.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALLT1.902e-1328.74Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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