CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RENSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 49/174 (28.16%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838
            +++ EYQ  ++   +G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  +E  + AG +LG  +       +G  V KV + +   +  E YF+++LDR     + +   +GG  IE LA + P  + ++ +D   GI    A ++VD
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVANTAEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTADEAFEYAGNILGMDI-------KGHTVHKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGVEIEVLAVERPEALARIAVDPAVGIDQAKAEEIVD 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HALSA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarium GN=sucC PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            + +HEYQ  E+ A  GI  P+     SVDE  +    + +P    + VK+Q+  GGRG         GG+ + +   E  + A  +LG  L       +G  V +V + E +   NE+Y  + +DR    P+++   +GG  IE +AE+ P  IV+  +D   G+    A   V
Sbjct:    1 MKLHEYQAKEVFADAGIPTPESALATSVDEAVEVADALDYP----VAVKAQVHVGGRGKA-------GGIKLAENTAEAREAAESILGMDL-------KGYTVDRVLVEEAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAV 156          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HALS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            + +HEYQ  E+ A  GI  P+     SVDE  +    + +P    + VK+Q+  GGRG         GG+ + +   E  + A  +LG  L       +G  V +V + E +   NE+Y  + +DR    P+++   +GG  IE +AE+ P  IV+  +D   G+    A   V
Sbjct:    1 MKLHEYQAKEVFADAGIPTPESALATSVDEAVEVADALDYP----VAVKAQVHVGGRGKA-------GGIKLAENTAEAREAAESILGMDL-------KGYTVDRVLVEEAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAV 156          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_LEIXX (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leifsonia xyli subsp. xyli GN=sucC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 48/172 (27.91%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            ++++EYQ  +L  KYG+ V  G+   + +EV+ A + +   +   VVK+Q+  GGRG         GGV + K  +E E+ A  +LG  +       +G +V +V +     +  E YF+++LDR     + +   +GG  IE LA + P  + ++ +D   G+    A ++
Sbjct:    1 MDLYEYQARDLFEKYGVPVLPGIVADTPEEVRAAAEKLGGVN---VVKAQVKTGGRGK-------VGGVKVAKNPDEAEEAAKAILGLDI-------KGHVVRRVMVSGGARIAREFYFSVLLDRANRSYLSLTSVEGGMEIEQLAVEKPEALARIGVDPIAGVDTTKATEI 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides thetaiotaomicron GN=sucC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGL----AVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 814
            + IHEYQ  E+ +KYGI V +      A  +V   K+   D       +V+K+Q+L GGRG         GGV +V   E+    A  +LG  +       +G  V+++ + E + +  E Y +  +DR T   I++  + GG  IE++A + P  I++  ID F G+ D
Sbjct:    1 MKIHEYQAKEIFSKYGIPVERHTLCRTAAGAVAAYKRMGSD------RVVIKAQVLTGGRGKA-------GGVKLVDNTEDTYQEAKNILGMSI-------KGLPVNQILVSEAVDIAAEYYVSFTIDRNTRSVILMMSASGGMDIEEVARQSPEKIIRYAIDPFIGLPD 150          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_SACEN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=sucC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 49/174 (28.16%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838
            ++++EYQ  EL A +G+    G      D  K A + +      +VVK+Q+  GGRG         GGV + +  +E +  A  +LG  +       +G I  +V +     +V+E YF+ +LDR     + +   +GG  IE++A   P  + K+ ID   G+ +  A ++VD
Sbjct:    1 MDLYEYQAKELFASHGVPTLPGSVATDSDGAKAAAEQL---GGPVVVKAQVKTGGRGKA-------GGVKLAENPDEAKTKAEAILGLDI-------KGHITRRVLITTASDIVDEYYFSFLLDRANRNFLAMASVEGGMEIEEVAATKPEALAKIAIDPIQGVDEAKAREIVD 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia pneumoniae GN=sucC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 50/168 (29.76%), Postives = 82/168 (48.81%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEE-VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +++HEYQ  +L+A Y + +P    V+S +E    + K+  D        VVK Q+ AGGRG         GGV + K    +     K+LG    + QT      V KV +   +++  E Y A+++DRK   P+++    GG  IE++A   P  I+ +P+  +  I
Sbjct:    1 MHLHEYQAKDLLASYDVPIPPYWVVSSEEEGELLITKSGLD------SAVVKVQVHAGGRGK-------HGGVIVAKSSAGILQAVAKLLGMHFTSNQTADGFLPVEKVLISPLVAIQREYYVAVIMDRKHRCPVLMLSKAGGMDIEEVAHSSPEQILTLPLTSYGHI 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 47/173 (27.17%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838
            +++ EYQ  EL AK+ +    G    S ++ K   +++    K ++VK+Q+  GGRG    K+G  G  +    E+    A  +LG  +       +G IV K+ + E   +  E Y + +LDR     + +   +GG  IE++A   P  + KVP+D   G+ +  A ++ +
Sbjct:    1 MDLFEYQAKELFAKHNVPTTPGRVTESAEDAKAIAEEI---GKPVMVKAQVKVGGRG----KAG--GVKYAATPEDALTHAQNILGLDI-------KGHIVKKLLVAEASDIAEEYYISFLLDRANRTYLAMCSVEGGMEIEEVAATKPERLAKVPVDAVKGVDEAFAREIAE 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ARTAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter aurescens (strain TC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 49/173 (28.32%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            +++ EYQ  ++   +G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  EE  + +  +LG  +       +G  V+KV + +   +  E YF+++LDR     + +   +GG  IE LA + P  + K+ ID   GI    A ++V
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTAEEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEFYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIV 156          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ACIC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 48/176 (27.27%), Postives = 85/176 (48.30%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGK-MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +++ EYQ  EL A +G+ +  G    + D+     + +      +VVK+Q+  GGRG         GGV +    +    A + +LG  +       +G  V +V +   + + +E Y A ++DR     + +G ++GG  IE +A + P  IV+VPID   G+    AA++ D +
Sbjct:    1 MDLFEYQAKELFAAHGVPITPGEVAENPDQAADIARRL---GGRVVVKAQVKTGGRGKA-------GGVKLADDADAAAAAAEAILGMEI-------RGHRVHRVLVTTAVDIAHEYYVAFLVDRSRRSFLAMGSAEGGVEIEQVAAENPQAIVRVPIDATEGVDATLAARIADDI 159          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RENSM2.484e-1328.16Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALSA2.484e-1329.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALS32.484e-1329.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEIXX4.237e-1327.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACTN4.237e-1330.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SACEN5.533e-1328.16Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLPN5.533e-1329.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCVP2.103e-1227.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTAT3.587e-1228.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIC14.684e-1227.27Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
back to top