CF832370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RENSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=sucC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13 Identity = 49/174 (28.16%), Postives = 85/174 (48.85%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838 +++ EYQ ++ +G+ V G+ + +E K A + + VVK+Q+ GGRG GGV + K +E + AG +LG + +G V KV + + + E YF+++LDR + + +GG IE LA + P + ++ +D GI A ++VD Sbjct: 1 MDLFEYQARDMFEAHGVPVLAGIVANTAEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTADEAFEYAGNILGMDI-------KGHTVHKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGVEIEVLAVERPEALARIAVDPAVGIDQAKAEEIVD 157
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HALSA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarium GN=sucC PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13 Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835 + +HEYQ E+ A GI P+ SVDE + + +P + VK+Q+ GGRG GG+ + + E + A +LG L +G V +V + E + NE+Y + +DR P+++ +GG IE +AE+ P IV+ +D G+ A V Sbjct: 1 MKLHEYQAKEVFADAGIPTPESALATSVDEAVEVADALDYP----VAVKAQVHVGGRGKA-------GGIKLAENTAEAREAAESILGMDL-------KGYTVDRVLVEEAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAV 156
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HALS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=sucC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13 Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835 + +HEYQ E+ A GI P+ SVDE + + +P + VK+Q+ GGRG GG+ + + E + A +LG L +G V +V + E + NE+Y + +DR P+++ +GG IE +AE+ P IV+ +D G+ A V Sbjct: 1 MKLHEYQAKEVFADAGIPTPESALATSVDEAVEVADALDYP----VAVKAQVHVGGRGKA-------GGIKLAENTAEAREAAESILGMDL-------KGYTVDRVLVEEAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAV 156
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_LEIXX (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leifsonia xyli subsp. xyli GN=sucC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13 Identity = 48/172 (27.91%), Postives = 87/172 (50.58%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 ++++EYQ +L KYG+ V G+ + +EV+ A + + + VVK+Q+ GGRG GGV + K +E E+ A +LG + +G +V +V + + E YF+++LDR + + +GG IE LA + P + ++ +D G+ A ++ Sbjct: 1 MDLYEYQARDLFEKYGVPVLPGIVADTPEEVRAAAEKLGGVN---VVKAQVKTGGRGK-------VGGVKVAKNPDEAEEAAKAILGLDI-------KGHVVRRVMVSGGARIAREFYFSVLLDRANRSYLSLTSVEGGMEIEQLAVEKPEALARIGVDPIAGVDTTKATEI 155
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides thetaiotaomicron GN=sucC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13 Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGL----AVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 814 + IHEYQ E+ +KYGI V + A +V K+ D +V+K+Q+L GGRG GGV +V E+ A +LG + +G V+++ + E + + E Y + +DR T I++ + GG IE++A + P I++ ID F G+ D Sbjct: 1 MKIHEYQAKEIFSKYGIPVERHTLCRTAAGAVAAYKRMGSD------RVVIKAQVLTGGRGKA-------GGVKLVDNTEDTYQEAKNILGMSI-------KGLPVNQILVSEAVDIAAEYYVSFTIDRNTRSVILMMSASGGMDIEEVARQSPEKIIRYAIDPFIGLPD 150
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_SACEN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=sucC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13 Identity = 49/174 (28.16%), Postives = 84/174 (48.28%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838 ++++EYQ EL A +G+ G D K A + + +VVK+Q+ GGRG GGV + + +E + A +LG + +G I +V + +V+E YF+ +LDR + + +GG IE++A P + K+ ID G+ + A ++VD Sbjct: 1 MDLYEYQAKELFASHGVPTLPGSVATDSDGAKAAAEQL---GGPVVVKAQVKTGGRGKA-------GGVKLAENPDEAKTKAEAILGLDI-------KGHITRRVLITTASDIVDEYYFSFLLDRANRNFLAMASVEGGMEIEEVAATKPEALAKIAIDPIQGVDEAKAREIVD 157
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia pneumoniae GN=sucC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13 Identity = 50/168 (29.76%), Postives = 82/168 (48.81%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEE-VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +++HEYQ +L+A Y + +P V+S +E + K+ D VVK Q+ AGGRG GGV + K + K+LG + QT V KV + +++ E Y A+++DRK P+++ GG IE++A P I+ +P+ + I Sbjct: 1 MHLHEYQAKDLLASYDVPIPPYWVVSSEEEGELLITKSGLD------SAVVKVQVHAGGRGK-------HGGVIVAKSSAGILQAVAKLLGMHFTSNQTADGFLPVEKVLISPLVAIQREYYVAVIMDRKHRCPVLMLSKAGGMDIEEVAHSSPEQILTLPLTSYGHI 155
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12 Identity = 47/173 (27.17%), Postives = 84/173 (48.55%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 838 +++ EYQ EL AK+ + G S ++ K +++ K ++VK+Q+ GGRG K+G G + E+ A +LG + +G IV K+ + E + E Y + +LDR + + +GG IE++A P + KVP+D G+ + A ++ + Sbjct: 1 MDLFEYQAKELFAKHNVPTTPGRVTESAEDAKAIAEEI---GKPVMVKAQVKVGGRG----KAG--GVKYAATPEDALTHAQNILGLDI-------KGHIVKKLLVAEASDIAEEYYISFLLDRANRTYLAMCSVEGGMEIEEVAATKPERLAKVPVDAVKGVDEAFAREIAE 157
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ARTAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter aurescens (strain TC1) GN=sucC PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12 Identity = 49/173 (28.32%), Postives = 84/173 (48.55%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835 +++ EYQ ++ +G+ V G+ + +E K A + + VVK+Q+ GGRG GGV + K EE + + +LG + +G V+KV + + + E YF+++LDR + + +GG IE LA + P + K+ ID GI A ++V Sbjct: 1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTAEEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEFYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIV 156
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ACIC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=sucC PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12 Identity = 48/176 (27.27%), Postives = 85/176 (48.30%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGK-MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +++ EYQ EL A +G+ + G + D+ + + +VVK+Q+ GGRG GGV + + A + +LG + +G V +V + + + +E Y A ++DR + +G ++GG IE +A + P IV+VPID G+ AA++ D + Sbjct: 1 MDLFEYQAKELFAAHGVPITPGEVAENPDQAADIARRL---GGRVVVKAQVKTGGRGKA-------GGVKLADDADAAAAAAEAILGMEI-------RGHRVHRVLVTTAVDIAHEYYVAFLVDRSRRSFLAMGSAEGGVEIEQVAAENPQAIVRVPIDATEGVDATLAARIADDI 159 The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bpback to top |