CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_EXIS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 70/172 (40.70%), Postives = 105/172 (61.05%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +N+HEYQ  EL+  YG+ VP G+A  +V+E   A + +    K  VVK+QI AGGRG         GGV + K +EEV++ A ++LG+ LVT QTGP+GK++ ++ + E  ++  E Y  I+LDR T   +I+G S+GG  IE++AE  P  I+K  +D   G+    A K+
Sbjct:    1 MNVHEYQAKELLRSYGVPVPNGIAAFTVEEAVDAAEQLSGPIK--VVKAQIHAGGRGKA-------GGVKLAKSQEEVKEFATELLGKTLVTHQTGPEGKVIQRLLVEEGCAIDKEYYLGIVLDRVTGRVVIMGSSEGGMDIEEVAEATPEKIIKEVVDPAVGLQAFQARKL 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia sp. (strain 383) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 68/169 (40.24%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  +++       VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR T   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMVEEGADIKQELYVSLVVDRVTQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA 160          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG E++ KYG+ VP+G    + DE  KA + +       VVK+QI AGGRG         GGV I K KEEV+  A ++LG+ LVT QTGP G+ + ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  IVK  ID   G+    A K+
Sbjct:    1 MNIHEYQGKEVLRKYGVAVPEGKVAFTADEAVKAAEAL--SSSVYVVKAQIHAGGRGKA-------GGVKIAKSKEEVKAYAEELLGKTLVTHQTGPDGQQIKRLLIEEGCDIKKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIVKEVIDPAVGLQSYQARKI 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_AZOSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Azoarcus sp. (strain BH72) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 72/176 (40.91%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQ  E++ KYG+  P+G+   SVDE  KA +++    K  VVK+QI AGGRG G       GGV + K  +EV  LAG++LG  LVT QTGP+G+ V ++ + E   +  E Y A + DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD  A ++  G+
Sbjct:    1 MKIHEYQAKEVLRKYGVVTPRGIPCFSVDEAVKAAEEL--GGKIWVVKAQIHAGGRGKG-------GGVKLGKSLDEVRTLAGQILGMQLVTHQTGPEGQKVRRLLIEEGADIKKEYYVAALTDRATQKVAMMASSEGGMDIEEVAHNTPEKIIKVFVDPLAGLTDAQAIELAKGI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ACICJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 73/178 (41.01%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGL--KGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ  EL+  YG+ V  G    + +E  +A + +       VVKSQI AGGRG G FK     KGGV + K  EEV   A  MLG  LVTKQTGP G++V +VY+     +  E+Y ++++DR  +  +I+  ++GG  IE++AEK+P  I++V +D  +GI+   A ++  GL
Sbjct:    1 MNIHEYQAKELLKSYGVAVLDGHVAWTGEEAAEAARKL--PGPVYVVKSQIHAGGRGAGHFKDDPEGKGGVRLAKSPEEVAAAAEAMLGNTLVTKQTGPAGRVVRRVYVEAGCDIKRELYLSLLVDRAKSEIVIMASTEGGMEIEEVAEKHPEKILRVAVDPASGISGFHARRLGFGL 176          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_SINMW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 74/179 (41.34%), Postives = 103/179 (57.54%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  YG  V +G+A+ S DE   A + +       VVKSQI AGGRG G FK   +  KGGV + K  +EV   A +MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR       +  ++GG  IE +AE  P  IV V ID   G+T +D   + + L
Sbjct:    1 MNIHEYQAKALLKSYGAPVAEGVAIFSADEAAAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELGADAKGGVRLAKSADEVVAHAREMLGNTLVTKQTGPSGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPDKGVTADDLKTLTEAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHIME (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium meliloti GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 75/179 (41.90%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  YG  V +G+A+ S DE + A + +       VVKSQI AGGRG G FK      KGGV + K  +EV   A  MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR       +  ++GG  IE +AE  P  IV V ID   G+T E+   + D L
Sbjct:    1 MNIHEYQAKALLKSYGAPVAEGVAIFSADEAEAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELGPDAKGGVRLAKSVDEVVANAKDMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPEKGVTAENLKTLADAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PROVI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 65/166 (39.16%), Postives = 105/166 (63.25%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQG +++ K+G+ VPKG+   S +E K+A + +F +     +VVK+QI AGGRG         GGV + K  EE  ++A +M+G  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P+ ++K+ +D   G+
Sbjct:    1 MNIHEYQGKDILRKFGVAVPKGIVAHSPEEAKQAAEQLFEEQSSPVVVVKAQIHAGGRGKA-------GGVKLAKSPEEAYEIASQMIGTTLVTHQTGPEGKEVRRLLVEEGMNIDREFYVGITLDRATSQNVLMISTEGGMEIEKVAEETPDRLLKIQVDPLFGL 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_MYXXD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Myxococcus xanthus (strain DK 1622) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 70/176 (39.77%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG E+  KYG+  PKG+   S ++ + A +++      +VVK+QI AGGRG G       GGV + K   E ++LA +MLG  L T QTGP+G+ V KVY+ E L++  E+Y  + LDR T+    +   +GG  IE++AEK+P  I++  +D   G  D    K+  GL
Sbjct:    1 MKIHEYQGKEIFRKYGVPTPKGILAVSANDAEAAAKEL--GTSVVVVKAQIHAGGRGKG-------GGVKLAKSPAEAKELAKQMLGMKLKTIQTGPEGQTVHKVYIEEGLAIGQELYLGVTLDRATSRITFMASREGGVEIEEVAEKHPEKILRESVDPAVGFQDFQGRKLAFGL 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            + +HEYQ  E++ ++  NVP G  + +V + +KA  +V      +VVK+QI AGGRG G       GGV + K K++ +  A K+LG  L+T QTGP+GK V KVYL + L +  E Y +I+LDR     II+  ++GG  IE++AE +P  I+K+ ID   GI
Sbjct:    1 MKVHEYQAKEILRRHNANVPFGKVIDAVGDFEKAYNEVVQKSPVVVVKAQIHAGGRGKG-------GGVKVAKTKDDAKAAAEKILGMQLITPQTGPEGKKVLKVYLEQGLEIAKEYYLSILLDRAIRKTIIMASTEGGMEIEEVAETHPEKIIKIQIDPGIGI 157          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_EXIS21.357e-2740.70Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURS31.357e-2740.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACLD1.357e-2741.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AZOSB1.357e-2740.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACICJ1.357e-2741.01Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SINMW1.772e-2741.34Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHIME1.772e-2741.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PROVI1.772e-2739.16Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYXXD1.772e-2739.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPBA1.772e-2741.46Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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