CF832370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cenocepacia (strain HI2424) GN=sucC PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27 Identity = 67/169 (39.64%), Postives = 106/169 (62.72%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 + IHEYQG E++ K+G+ VP+G SVDE K +++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURCC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cenocepacia (strain MC0-3) GN=sucC PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27 Identity = 67/169 (39.64%), Postives = 106/169 (62.72%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 + IHEYQG E++ K+G+ VP+G SVDE K +++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURCA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cenocepacia (strain AU 1054) GN=sucC PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27 Identity = 67/169 (39.64%), Postives = 106/169 (62.72%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 + IHEYQG E++ K+G+ VP+G SVDE K +++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia ambifaria (strain MC40-6) GN=sucC PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27 Identity = 67/169 (39.64%), Postives = 106/169 (62.72%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 + IHEYQG E++ K+G+ VP+G SVDE K +++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_JANMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Janthinobacterium sp. (strain Marseille) GN=sucC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.155e-27 Identity = 70/169 (41.42%), Postives = 99/169 (58.58%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 +NIHEYQG E++ KYG+ PKG SVDE +A + + K VVK+QI AGGRG G GGV + K +EV A +LG LVT QTGP+G++V ++ + E + E+Y +++DR + ++ S+GG IE +AE P I KV ID G+ D +A Sbjct: 1 MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKL--GGKVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPVKGLLDSEA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=sucC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27 Identity = 72/179 (40.22%), Postives = 102/179 (56.98%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPSGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_NITWN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=sucC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27 Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ ++G+ V +G+ V E + A + + VVKSQI AGGRG G FK +G KGGV + + +EV+ AG+MLG LVT QTGP GK V+++Y+ E + E YF+ ++DR+T+ + ++GG +IE++A K P IV +D G+ V L Sbjct: 1 MNIHEYQAKALLREFGVPVSRGVPVLQASEAEAAAETL--GGPVWVVKSQIHAGGRGKGKFKEASAGEKGGVRLARSIDEVKTFAGQMLGATLVTAQTGPAGKQVNRLYIEEGSDIDKEFYFSALVDRETSRISFVVSTEGGMNIEEVAHKTPEKIVTFSVDPATGVMSHHGRTVARAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium phaeobacteroides (strain DSM 266) GN=sucC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27 Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +NIHEYQG +++ K+G+ VPKG+ S +E K+A +F + +V+K+QI AGGRG GGV + K EEV D+A +MLG LVT QTGP+GK V ++ + E +++ E Y I LDR T+ +++ ++GG IE +AE+ P ++K+ ++ G+ Sbjct: 1 MNIHEYQGKDILRKFGVAVPKGIVAFSPEEAKQAAIQLFEEQNSPVVVIKAQIHAGGRGKA-------GGVKLAKSPEEVFDIAQQMLGITLVTHQTGPEGKEVRRLLVEEGMNIDKEFYVGITLDRSTSQNVLMVSTEGGMEIEKVAEETPEKLLKIQVNPLFGL 159
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLP8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobaculum parvum (strain NCIB 8327) GN=sucC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27 Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +NIHEYQG ++ ++G+ VPKG+ S +E K+A ++F + +VVK+QI AGGRG GGV + K EEV ++A KMLG LVT QTGP+GK V ++ + E +++ E Y I LDR T+ +++ ++GG IE +AE+ P ++K+ ++ G+ Sbjct: 1 MNIHEYQGKGILKQFGVAVPKGIVAFSAEEAKQAAAELFEEQSSPVVVVKAQIHAGGRGKA-------GGVKLAKSPEEVYEIAQKMLGTTLVTHQTGPEGKEVRRLLIEEGMNIDKEFYLGITLDRATSCNVLMVSTEGGMEIEKVAEETPEKLLKIQVNPKYGL 159
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=sucC PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27 Identity = 72/179 (40.22%), Postives = 102/179 (56.98%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177 The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bpback to top |