CF832370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=sucC PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27 Identity = 72/179 (40.22%), Postives = 102/179 (56.98%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=sucC PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27 Identity = 72/179 (40.22%), Postives = 102/179 (56.98%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CAUSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter sp. (strain K31) GN=sucC PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27 Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHE+Q ++A++G VP+G +V+E A + + VVKSQI AGGRG G FK KGGV +VK E+V+ A +MLG++LVT QTGP+GK V+++Y+ E ++ E Y ++++DR+T+ ++ ++GG IED+A P I ID G+ A + L Sbjct: 1 MNIHEHQAKAVLAEFGAPVPRGYPAFTVEEAVAAAEKL--GGPVFVVKSQIHAGGRGKGKFKGLGPDAKGGVRVVKSVEDVKTNAAEMLGRVLVTHQTGPKGKQVNRLYVEEGAAIAKEFYLSLLVDRETSMVSVVASTEGGMDIEDVAHATPEKIHSFSIDPATGVWPTHARALAKAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ACIAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=sucC PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27 Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 + IHEYQG E++ +G+ VP+G+ +V E +A Q + VVK+QI AGGRG G GGV + K ++V+ LAG +LG L T QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P+ IV ID GIT E KV + + Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIDDVKKLAGDILGMQLKTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRATQKVALIASSEGGMDIEEVAHSTPDKIVTEMIDPLTGITPEQGRKVAEAI 167
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_DECAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Dechloromonas aromatica (strain RCB) GN=sucC PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26 Identity = 69/176 (39.20%), Postives = 104/176 (59.09%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 + IHEYQG +++ K+G+ VP+G+ +V++ KA + + K VVK+QI AGGRG G GGV + E+V + AG++LG LVT QTGP+G+ V + + E + +E Y A + DR T I+ +GG IE++A K P IVKV ++ G+TDE A + G+ Sbjct: 1 MKIHEYQGKQILKKFGVTVPRGIHCTTVEDAVKAAETL--GGKVWVVKAQIHAGGRGKG-------GGVKVATSLEKVREYAGQILGMQLVTHQTGPEGQKVRHLLIEEGADIKHEYYVAALTDRATQSVAIMASYEGGMDIEEVAHKTPEKIVKVFVNPLVGLTDEQALTLAKGM 167
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RALPJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ralstonia pickettii (strain 12J) GN=sucC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26 Identity = 68/169 (40.24%), Postives = 102/169 (60.36%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 +NIHEYQG E++ KY + VP+G+ SVDE KA + + VVK+QI AGGRG G GGV + K E+V++ A +LG LVT QTGP+GK+V ++ + E + E+Y ++++DR + ++ S+GG IE++AE +P I + ID G+ D A Sbjct: 1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEAIKAAETL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVKEYASSILGMTLVTHQTGPEGKLVKRLLIEEGADIKKELYVSLVVDRVSQQVALMASSEGGMDIEEVAESHPEKIHTLLIDPQAGLQDAQA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PHEZH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Phenylobacterium zucineum (strain HLK1) GN=sucC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26 Identity = 67/167 (40.12%), Postives = 103/167 (61.68%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +NIHE+Q ++A++G+ VP+G SVDE +A + + VVKSQI AGGRG G F+ KGGV +VK +EV+ A +MLG++LVT QTG GK V+++Y+ E + E Y ++++DR+T+ ++ ++GG IE++A P IV ID G+ Sbjct: 1 MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKL--GGPVFVVKSQIHAGGRGKGRFEGLGPDAKGGVRVVKSVDEVKANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYLSLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSIDPATGV 165
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=sucC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26 Identity = 64/169 (37.87%), Postives = 106/169 (62.72%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 + IHEYQG E++ K+G+ VP+G V SVD+ KA +++ VVK+QI AGGRG G GGV + K ++V + + ++LG LVT QTGP+G+ V+++ + E + E+Y +++DR + +++ S+GG +E++AEK P +I K+ +D G+ D +A Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLDQVREYSEQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Trichomonas vaginalis PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26 Identity = 68/175 (38.86%), Postives = 102/175 (58.29%), Query Frame = 2 Query: 314 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 R NI E+Q E+ AKY + L S +E +A + + + V+K+Q+ GGRG G + ++G K GVH VK +E +A +MLG LVTKQTG G + V L + + + E+YFAI+LDR+T P++I ++GG IE++A +P I K +D GIT+E A + Sbjct: 8 RNFNILEWQSKEICAKYNVAAGINLVARSPEEAAEAFRKM--NLPAAVIKAQVYCGGRGKGHWLETGFKSGVHFVKSADEAAKIAKEMLGHHLVTKQTGKDGLLCQAVMLSDPVEVKRELYFAILLDRQTQSPVVIASTEGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNI 180
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PELPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=sucC PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26 Identity = 64/166 (38.55%), Postives = 104/166 (62.65%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +NIHEYQG +++ K+G+ VP+G+ S +E K+A + +F + +V+K+QI AGGRG GGV + K EE D+A +++G L+T QTGP+GK V +V + E +++ E Y I LDR T+ +++ ++GG IE +AE+ P ++K+ ID G+ Sbjct: 1 MNIHEYQGKDILRKFGVAVPRGIVAYSPEEAKQAAEQLFDELGCPVVVIKAQIHAGGRGKA-------GGVKLAKSPEESLDIAHQLIGMTLITHQTGPEGKEVRRVLVEEGMNIEKEFYVGITLDRSTSKNVLMVSTEGGMEIEKVAEETPERLLKIQIDPLFGM 159 The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bpback to top |