CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 72/179 (40.22%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  YG  V  G  V   DE K A  ++       VVK+QI AGGRG G FK   +G KGGV + K   E  +LA +MLG+ LVT QTGP GK V+++Y+ E   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L
Sbjct:    1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 72/179 (40.22%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  YG  V  G  V   DE K A  ++       VVK+QI AGGRG G FK   +G KGGV + K   E  +LA +MLG+ LVT QTGP GK V+++Y+ E   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L
Sbjct:    1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CAUSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter sp. (strain K31) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHE+Q   ++A++G  VP+G    +V+E   A + +       VVKSQI AGGRG G FK      KGGV +VK  E+V+  A +MLG++LVT QTGP+GK V+++Y+ E  ++  E Y ++++DR+T+   ++  ++GG  IED+A   P  I    ID   G+    A  +   L
Sbjct:    1 MNIHEHQAKAVLAEFGAPVPRGYPAFTVEEAVAAAEKL--GGPVFVVKSQIHAGGRGKGKFKGLGPDAKGGVRVVKSVEDVKTNAAEMLGRVLVTHQTGPKGKQVNRLYVEEGAAIAKEFYLSLLVDRETSMVSVVASTEGGMDIEDVAHATPEKIHSFSIDPATGVWPTHARALAKAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ACIAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG E++  +G+ VP+G+   +V E  +A Q +       VVK+QI AGGRG G       GGV + K  ++V+ LAG +LG  L T QTGP+G+ V ++Y+ +   + NE+Y +++ DR T    +I  S+GG  IE++A   P+ IV   ID   GIT E   KV + +
Sbjct:    1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIDDVKKLAGDILGMQLKTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRATQKVALIASSEGGMDIEEVAHSTPDKIVTEMIDPLTGITPEQGRKVAEAI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_DECAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Dechloromonas aromatica (strain RCB) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 69/176 (39.20%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG +++ K+G+ VP+G+   +V++  KA + +    K  VVK+QI AGGRG G       GGV +    E+V + AG++LG  LVT QTGP+G+ V  + + E   + +E Y A + DR T    I+   +GG  IE++A K P  IVKV ++   G+TDE A  +  G+
Sbjct:    1 MKIHEYQGKQILKKFGVTVPRGIHCTTVEDAVKAAETL--GGKVWVVKAQIHAGGRGKG-------GGVKVATSLEKVREYAGQILGMQLVTHQTGPEGQKVRHLLIEEGADIKHEYYVAALTDRATQSVAIMASYEGGMDIEEVAHKTPEKIVKVFVNPLVGLTDEQALTLAKGM 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RALPJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ralstonia pickettii (strain 12J) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 68/169 (40.24%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            +NIHEYQG E++ KY + VP+G+   SVDE  KA + +       VVK+QI AGGRG G       GGV + K  E+V++ A  +LG  LVT QTGP+GK+V ++ + E   +  E+Y ++++DR +    ++  S+GG  IE++AE +P  I  + ID   G+ D  A
Sbjct:    1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEAIKAAETL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVKEYASSILGMTLVTHQTGPEGKLVKRLLIEEGADIKKELYVSLVVDRVSQQVALMASSEGGMDIEEVAESHPEKIHTLLIDPQAGLQDAQA 160          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PHEZH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Phenylobacterium zucineum (strain HLK1) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 67/167 (40.12%), Postives = 103/167 (61.68%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHE+Q   ++A++G+ VP+G    SVDE  +A + +       VVKSQI AGGRG G F+      KGGV +VK  +EV+  A +MLG++LVT QTG  GK V+++Y+ E   +  E Y ++++DR+T+   ++  ++GG  IE++A   P  IV   ID   G+
Sbjct:    1 MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKL--GGPVFVVKSQIHAGGRGKGRFEGLGPDAKGGVRVVKSVDEVKANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYLSLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSIDPATGV 165          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 64/169 (37.87%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G  V SVD+  KA +++       VVK+QI AGGRG G       GGV + K  ++V + + ++LG  LVT QTGP+G+ V+++ + E   +  E+Y  +++DR +   +++  S+GG  +E++AEK P +I K+ +D   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLDQVREYSEQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEA 160          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Trichomonas vaginalis PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 68/175 (38.86%), Postives = 102/175 (58.29%), Query Frame = 2
Query:  314 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            R  NI E+Q  E+ AKY +     L   S +E  +A + +  +    V+K+Q+  GGRG G + ++G K GVH VK  +E   +A +MLG  LVTKQTG  G +   V L + + +  E+YFAI+LDR+T  P++I  ++GG  IE++A  +P  I K  +D   GIT+E A  +
Sbjct:    8 RNFNILEWQSKEICAKYNVAAGINLVARSPEEAAEAFRKM--NLPAAVIKAQVYCGGRGKGHWLETGFKSGVHFVKSADEAAKIAKEMLGHHLVTKQTGKDGLLCQAVMLSDPVEVKRELYFAILLDRQTQSPVVIASTEGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNI 180          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PELPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 64/166 (38.55%), Postives = 104/166 (62.65%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQG +++ K+G+ VP+G+   S +E K+A + +F +     +V+K+QI AGGRG         GGV + K  EE  D+A +++G  L+T QTGP+GK V +V + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ ID   G+
Sbjct:    1 MNIHEYQGKDILRKFGVAVPRGIVAYSPEEAKQAAEQLFDELGCPVVVIKAQIHAGGRGKA-------GGVKLAKSPEESLDIAHQLIGMTLITHQTGPEGKEVRRVLVEEGMNIEKEFYVGITLDRSTSKNVLMVSTEGGMEIEKVAEETPERLLKIQIDPLFGM 159          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHOS48.793e-2740.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS18.793e-2740.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAUSK8.793e-2738.55Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIAC8.793e-2739.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DECAR1.148e-2639.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RALPJ1.500e-2640.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PHEZH1.500e-2640.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPP1.500e-2637.87Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_TRIVA1.500e-2638.86Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]
SUCC_PELPB1.959e-2638.55Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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