CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CAUCR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter crescentus GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHE+Q   ++A++G  VP+G A  + DE   A + +       VVKSQI AGGRG G F+      KGGV +VK  EEV   A +MLG++LVT QTGP+GK V+++Y+ E  ++  E Y ++++DR ++   ++  ++GG  IED+A   P  I    ID   G+
Sbjct:    1 MNIHEHQAKAVLAEFGAPVPRGFAAFTPDEAAAAAEKL--GGPVFVVKSQIHAGGRGKGKFEGLGPDAKGGVRVVKSVEEVRSNAEEMLGRVLVTHQTGPKGKQVNRLYIEEGAAIAKEFYLSLLVDRASSKVSVVASTEGGMDIEDVAHSTPEKIHTFTIDPATGV 165          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CAUCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHE+Q   ++A++G  VP+G A  + DE   A + +       VVKSQI AGGRG G F+      KGGV +VK  EEV   A +MLG++LVT QTGP+GK V+++Y+ E  ++  E Y ++++DR ++   ++  ++GG  IED+A   P  I    ID   G+
Sbjct:    1 MNIHEHQAKAVLAEFGAPVPRGFAAFTPDEAAAAAEKL--GGPVFVVKSQIHAGGRGKGKFEGLGPDAKGGVRVVKSVEEVRSNAEEMLGRVLVTHQTGPKGKQVNRLYIEEGAAIAKEFYLSLLVDRASSKVSVVASTEGGMDIEDVAHSTPEKIHTFTIDPATGV 165          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus amyloliquefaciens (strain FZB42) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 66/172 (38.37%), Postives = 103/172 (59.88%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG E++ KYG++VP+G    + +E  +  + +       VVK+QI AGGRG         GGV I K K+EV++ A ++LG+ LVT QTGP G+++ ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++
Sbjct:    1 MNIHEYQGKEVLRKYGVSVPEGKVAFTAEEAVEKAESL--SSSVYVVKAQIHAGGRGKA-------GGVKIAKTKDEVKEYAEELLGKTLVTHQTGPDGQVIKRLLIEEGCDIKKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREI 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_NITSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitratiruptor sp. (strain SB155-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.558e-26
Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ  E+  +YG+ VP+G    +  E ++  Q +  D    VVK+QI AGGRG         GGV + +  +EVE +A +MLG  LVT QTGP+GK V KVY+ E   +  E Y  ++LDR +  P+++  ++GG  IE++A K P  I+KV ID   G       K+  GL
Sbjct:    1 MNIHEYQAKEIFREYGVPVPRGEVAFTGPEAREVAQRLGGDL--WVVKAQIHAGGRGKA-------GGVKLARSLDEVEKIAEEMLGMTLVTHQTGPEGKKVEKVYVEEGADIQKEYYLGMVLDRSSEMPVMMASTEGGMEIEEVAAKTPEKIIKVAIDPTIGFQGFHGRKLAFGL 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACHD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.558e-26
Identity = 70/172 (40.70%), Postives = 101/172 (58.72%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG EL+ +YG+ VP G    SVDE  +A +++       VVK+QI AGGRG         GGV + K  +EV   A ++LG+ LVT QTGP+GK V ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++
Sbjct:    1 MNIHEYQGKELLRQYGVAVPNGKVAFSVDEAVEAAKEL--GSNVCVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYADEILGKTLVTHQTGPEGKEVKRLLIEEGCDIQKEYYVGLVLDRATSRVVMMASEEGGTEIEEVAEKTPEKIFKEIIDPVVGLQGFQARRL 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORPE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella pertussis GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 70/176 (39.77%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella parapertussis GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 70/176 (39.77%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORBR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella bronchiseptica GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 70/176 (39.77%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ALKMQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 69/172 (40.12%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG E+M +YGI+VP+     +V+E  +A  D+    + + VK+QI AGGRG         GGV I +  EE +  A  +L +IL+TKQTGP+GK+V++V + E L +  E Y +  +D  T+  ++IG  +GG  IE++AEK P+ I K  ID   G+    A ++
Sbjct:    1 MNIHEYQGKEIMKQYGISVPRSRITFTVEEAVQAAIDL--GCEVIAVKAQIHAGGRGKA-------GGVKITRSLEETKSAAEAILDKILITKQTGPEGKVVNQVLIEEGLKIEKECYLSCAVDSTTSTVVLIGSPEGGMDIEEVAEKTPHKIFKESIDPAIGLQQYQARRL 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_NITHX (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 69/179 (38.55%), Postives = 101/179 (56.42%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ ++G+ V +G+ V    E + A + +       VVKSQI AGGRG G FK   +G KGGV + K  +EV+  A +MLG  LVT QTGP GK V+++Y+ E   +  E Y + ++DR+T+    +  ++GG +IED+A   P  IV   +D   G+       V   L
Sbjct:    1 MNIHEYQAKALLREFGVPVSRGVPVLKASEAEAAAETL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKQFASQMLGATLVTVQTGPAGKQVNRLYIEEGSDIDKEFYLSALVDRETSRVAFVVSTEGGVNIEDVAHTSPEKIVSFSVDPATGVMSHHGRTVAKAL 177          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_CAUCR1.959e-2640.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAUCN1.959e-2640.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACA21.959e-2638.37Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NITSB2.558e-2640.34Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACHD2.558e-2640.70Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORPE3.341e-2639.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORPA3.341e-2639.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORBR3.341e-2639.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALKMQ3.341e-2640.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NITHX4.364e-2638.55Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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