CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 95/140 (67.86%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +ED +E+ A+K +L+YI LDG IGCMVNGAGLAMATMDIIKL+GG PANFLDVGG ASE +V+ AFKI+ SD KV  I VNIFGGIMKCDVIA GIVNAA +V L VP+VVRLEGTNV+ G  IL +S + ++TA  + D
Sbjct:  237 EEDEKEIEASKYNLSYISLDGNIGCMVNGAGLAMATMDIIKLYGGNPANFLDVGGGASEEKVMNAFKIILSDPKVKGIFVNIFGGIMKCDVIAKGIVNAANEVKLNVPLVVRLEGTNVELGKEILNQSNLNIVTATTMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AGRRK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 93/141 (65.96%), Postives = 116/141 (82.27%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++ED +E+ A + DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 SEEDEKEIQAHEYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTAAFKIITADPAVQGILVNIFGGIMKCDVIAEGVLAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PHOLL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Photorhabdus luminescens subsp. laumondii GN=sucC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.110e-47
Identity = 91/142 (64.08%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SDE V A+LVNIFGGI++CD+IA GI+ A ++V + VPVVVRLEG N + G + L +SG+ +I A  L D
Sbjct:  235 PSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGAPANFLDVGGGATKERVTEAFKIILSDENVKAVLVNIFGGIVRCDLIADGIIGAVEEVGVHVPVVVRLEGNNAELGAKKLADSGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.110e-47
Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+  +V EAFKI+ SD+ V  I VNIFGGIMKCDVIA G+V A KQV L +P+VVRLEGTNVD G +IL +SG+ + +AE + D
Sbjct:  237 EEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATKQVGLTLPLVVRLEGTNVDLGKKILDDSGLNITSAESMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHORT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 94/140 (67.14%), Postives = 115/140 (82.14%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIKL GG PANFLDVGG A+  +V  AFKI+ SD  V  ILVNIFGGIM+CDVIA G++ AA++V+L VP+VVRLEGTNV+ G +I+ ESG+ +I+A++L D
Sbjct:  247 EEDPMELEASKHDLNYIKLDGSIGCMVNGAGLAMATMDIIKLKGGAPANFLDVGGGATRERVTAAFKIILSDPNVDGILVNIFGGIMRCDVIAEGVIAAAREVSLNVPLVVRLEGTNVELGKKIMVESGLPIISADNLAD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain W619) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain KT2440) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEP1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEE4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas entomophila (strain L48) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AZOVD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 91/142 (64.08%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPREV AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD KV A+LVNIFGGI++CD+IA GI+ A ++V +KVPVVVRLEG N + G  +L  SG+ +I A  L D
Sbjct:  235 PSQDDPREVHAAKWELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGRPANFLDVGGGATKERVTEAFKIILSDAKVKAVLVNIFGGIVRCDMIAEGIIGAVREVGVKVPVVVRLEGNNAELGAEMLARSGLNIIPASTLTD 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ALKOO8.496e-4867.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRRK8.496e-4865.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PHOLL1.110e-4764.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACLD1.110e-4766.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHORT1.449e-4767.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPW1.449e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPK1.449e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEP11.449e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEE41.449e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AZOVD1.449e-4764.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
back to top