CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ALTMD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AA+ +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V ++VPVVVRLEGTN + G  +L  SG+ +I AE L D
Sbjct:  235 PSQEDAREAHAAQWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVEVPVVVRLEGTNAELGREVLANSGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEFN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella frigidimarina (strain NCIMB 400) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +L +SG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEDO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +L +SG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS195) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +L +SG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS185) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +L +SG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +L +SG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS223) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +L +SG+ +I A  L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOP5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 91/141 (64.54%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K +L YI L+G IGCMVNGAGLAMAT+DIIKL+G +PANFLDVGG A+E +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K V L+VP+VVRLEGTNV++G  I+++SG+ +++A+DLDD
Sbjct:  246 TEEDAKEIEASKHELAYIALEGTIGCMVNGAGLAMATLDIIKLYGESPANFLDVGGGATEEKVTAAFKIITADPNVKGILVNIFGGIMKCDVIARGVIAAVKTVGLEVPLVVRLEGTNVEEGKAIIRDSGLNVLSADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_HALHL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=sucC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV AA+ +LNYI LDG IGCMVNGAGLAMATMD+IKLHGG PANFLDVGG  +  +V EAFKI+ S   V  ILVNIFGGI++CD+IA GIV A + V ++VPVVVRLEGTNV+QG +IL +SG+ LI A+DL D
Sbjct:  238 TQEDETEVRAAEHNLNYITLDGNIGCMVNGAGLAMATMDVIKLHGGAPANFLDVGGGTNAERVAEAFKIILSSPSVEGILVNIFGGIVRCDMIAEGIVAAVQDVGVEVPVVVRLEGTNVEQGKQILADSGLDLIPADDLAD 378          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEMY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas mendocina (strain ymp) GN=sucC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 88/142 (61.97%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  A K +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L +SG+ +I A  L D
Sbjct:  235 PSQDDPREAHAQKWELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGQPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLADSGLNIIAATSLTD 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ALTMD1.449e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEFN1.893e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEDO1.893e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB91.893e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB81.893e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB51.893e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB21.893e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOP51.893e-4764.54Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALHL1.893e-4768.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEMY2.472e-4761.97Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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