CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEA6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=sucC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 90/142 (63.38%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AAK +LNY+ LDG IGCMVNGAGLAM TMDI+ LHGG+PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V + +PVVVRLEGTN + G  +L  SG+ +I A  L D
Sbjct:  235 PSQEDAREAQAAKWELNYVALDGNIGCMVNGAGLAMGTMDIVNLHGGSPANFLDVGGGATKERVAEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVTIPVVVRLEGTNAELGRDVLANSGLDIIAASSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ENT38 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Enterobacter sp. (strain 638) GN=sucC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 90/141 (63.83%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A ++V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVEEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus pumilus (strain SAFR-032) GN=sucC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 92/140 (65.71%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+  +V EAFKI+ SD+ V  I VNIFGGIMKCDVIA G+V A KQV L +P+VVRLEGTNV+ G +IL +SG+ + +AE + D
Sbjct:  237 EEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGDPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATKQVGLTLPLVVRLEGTNVELGKKILSDSGLNITSAESMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEHH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella halifaxensis (strain HAW-EB4) GN=sucC PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.228e-47
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V ++VPVVVRLEGTN + G  +L  SG+ +I AE L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVEVPVVVRLEGTNANLGRDVLASSGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MARMS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Marinomonas sp. (strain MWYL1) GN=sucC PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.228e-47
Identity = 90/142 (63.38%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A +QV + VPVVVRLEGTN ++G  +L  SG+ +I A  L D
Sbjct:  235 PSQEDEREAHAAKWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVEQVGVNVPVVVRLEGTNAEKGREVLANSGLDIIAATSLKD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MARAV (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.216e-47
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AAK +LNY+ L+G IGCMVNGAGLAM TMDIIKL GG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQEDSREAEAAKWELNYVALEGNIGCMVNGAGLAMGTMDIIKLSGGQPANFLDVGGGATKERVSEAFKIILSDDAVQAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGTKVLAESGLNIIAATSLAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ENTS8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.216e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ DLNY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V  AFK++ S  KV AI VNIFGGI++CD+IA GI+ A K+V +KVPV+VRLEGTNVD G ++L  SG+ +I A+D++D
Sbjct:  236 TQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGATKERVTTAFKLILSSNKVKAIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVIVRLEGTNVDAGKQLLATSGLAIIPADDIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain M12) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ DLNY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V  AFK++ S  KV AI VNIFGGI++CD+IA GI+ A K+V +KVPV+VRLEGTNVD G ++L  SG+ +I A+D++D
Sbjct:  236 TQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGATKERVTTAFKLILSSNKVKAIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVIVRLEGTNVDAGKQLLATSGLAIIPADDIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ DLNY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V  AFK++ S  KV AI VNIFGGI++CD+IA GI+ A K+V +KVPV+VRLEGTNVD G ++L  SG+ +I A+D++D
Sbjct:  236 TQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGATKERVTTAFKLILSSNKVKAIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVIVRLEGTNVDAGKQLLATSGLAIIPADDIND 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PSEA62.472e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ENT382.472e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACP22.472e-4765.71Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEHH3.228e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARMS3.228e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARAV4.216e-4764.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ENTS84.216e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLFT5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLFM5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLFA5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
back to top