CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XYLF2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain M23) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 115/141 (81.56%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ DLNY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V  AFK++ S  KV AI VNIFGGI++CD+IA GI+ A K+V +KVPV+VRLEGTNVD G ++L  SG+ +I A+D++D
Sbjct:  236 TQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGATKERVTTAFKLILSSNKVKAIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVIVRLEGTNVDAGKQLLATSGLAIIPADDIND 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_VIBPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio parahaemolyticus GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/142 (63.38%), Postives = 111/142 (78.17%), Query Frame = -2 
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AA+ +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V + VPVVVRLEGTN D G  +L  S + +I AE L D
Sbjct:  235 PSQEDEREAHAAQWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVSVPVVVRLEGTNADLGREVLANSDVDIIAAESLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHISS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella sonnei (strain Ss046) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHIFL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella flexneri GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHIDS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOSE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain SE11) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOLU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain K12) GN=sucC PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOLC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_XYLF25.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBPA5.507e-4763.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHISS5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHIFL5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHIDS5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOSM5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOSE5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOLU5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOLI5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOLC5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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