CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O6 GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOHS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O9:H4 (strain HS) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECODH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain K12 / DH10B) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECOBW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain K12 / BW2952) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECO8A (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O8 (strain IAI1) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAEVGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECO7I (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECO5E (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O157:H7 GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECO55 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain 55989 / EAEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
[Close]
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ECO24 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = -2 
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+KV A+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  236 SQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTD 376
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ECOL65.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOHS5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECODH5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECOBW5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO8A5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO7I5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO5E5.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO575.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO555.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO245.507e-4763.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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