CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V EAFKI+TSD  V  ILVNIFGGIM+CD+IA GI+ A K+V L+VP+VVRLEGTNV++G  I+  SG+ +I  ++L D
Sbjct:  246 TEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQVPLVVRLEGTNVEKGKEIIANSGLNVIAGDNLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V EAFKI+TSD  V  ILVNIFGGIM+CD+IA GI+ A K+V L+VP+VVRLEGTNV++G  I+  SG+ +I  ++L D
Sbjct:  246 TEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQVPLVVRLEGTNVEKGKEIIANSGLNVIAGDNLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V EAFKI+TSD  V  ILVNIFGGIM+CD+IA GI+ A K+V L+VP+VVRLEGTNV++G  I+  SG+ +I  ++L D
Sbjct:  246 TEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQVPLVVRLEGTNVEKGKEIIANSGLNVIAGDNLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V EAFKI+TSD  V  ILVNIFGGIM+CD+IA GI+ A K+V L+VP+VVRLEGTNV++G  I+  SG+ +I  ++L D
Sbjct:  246 TEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQVPLVVRLEGTNVEKGKEIIANSGLNVIAGDNLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB1_MOUSE (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 95/141 (67.38%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QED R+  AA AD+NYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV AILVNIFGGIM+CDVIA GIV A K + +++PVVVRL+GT VD    ++ +SG+ ++  +DLD+
Sbjct:  295 SQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGTRVDDAKALIADSGLKILACDDLDE 435          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB1_DICDI (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 95/141 (67.38%), Postives = 123/141 (87.23%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            +QEDPREV AA+ DLNYIGLDG IGC+VNGAGLAMA+MDIIKL+GG+PANFLDVGG A++ QV EA K+++SD+KV +ILVNIFGGIMKCDVIA GI+ A K++++  P+VVRL+GTNV+   +I+++SG+ LI A++LDD
Sbjct:  277 SQEDPREVKAAEFDLNYIGLDGNIGCLVNGAGLAMASMDIIKLYGGSPANFLDVGGGATQKQVTEAIKLISSDKKVKSILVNIFGGIMKCDVIALGIIAALKELSIATPLVVRLQGTNVEAAKKIMEDSGLRLIAADNLDD 417          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SINMW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V +AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 TEEDEKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTQAFKIITADPAVKGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 95/141 (67.38%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G TPANFLDVGG A++ +V  AFKI+T+D  V  IL+NIFGGIMKCD+IA G+V A K V LKVP+VVRLEGTNV+ G +I++ESG+ +++A+DLDD
Sbjct:  246 TEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMATMDIIKLYGMTPANFLDVGGGANKEKVTAAFKIITADPNVKGILINIFGGIMKCDIIAEGVVAAVKDVGLKVPLVVRLEGTNVEAGKKIIQESGLNVLSADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_OLICO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 97/141 (68.79%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL YI LDG IGCMVNGAGLAMAT+DIIKL+G +PANFLDVGG ASE +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA+G+V A K V LKVP+VVRLEGTNV++G +I++ESG+ ++ A+DLDD
Sbjct:  246 TEEDAKEIEASKYDLAYIALDGTIGCMVNGAGLAMATLDIIKLYGESPANFLDVGGGASEEKVTAAFKIITADPNVKGILVNIFGGIMKCDVIAAGVVAAVKAVGLKVPLVVRLEGTNVEEGKKIIRESGLNVLPADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_GEOTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus thermodenitrificans (strain NG80-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 100/140 (71.43%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+EV A+K DLNYI LDG IGCMVNGAGLAMATMDIIK +GG PANFLDVGG ASE +V EAFKI+ SD  V  I VNIFGGIMKCDVIASGIV A KQV L +P+VVRLEGTNV+ G +IL+ESG+ +  AE + D
Sbjct:  237 EEDPKEVEASKYDLNYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGASEEKVTEAFKIILSDPNVKGIFVNIFGGIMKCDVIASGIVAATKQVGLTLPLVVRLEGTNVELGKKILQESGLNITAAESMAD 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHOSK4.075e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS54.075e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS44.075e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS14.075e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB1_MOUSE4.075e-5067.38Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_DICDI4.075e-5067.38Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCC_SINMW5.321e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOPB5.321e-5067.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_OLICO5.321e-5068.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOTN5.321e-5071.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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