CF832371
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium tuberculosis GN=sucC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28 Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = -2 Query: 286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLIT 681 DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++ + HGG PANFLD+GG AS + ++ D++V ++ VN+FGGI CD +A+GIV A + P+VVRL+G NV++G RIL E+ L+T Sbjct: 231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDQQVKSVFVNVFGGITSCDAVATGIVKALGMLGDEANKPLVVRLDGNNVEEGRRILTEANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=sucC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28 Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = -2 Query: 286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLIT 681 DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++ + HGG PANFLD+GG AS + ++ D++V ++ VN+FGGI CD +A+GIV A + P+VVRL+G NV++G RIL E+ L+T Sbjct: 231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDQQVKSVFVNVFGGITSCDAVATGIVKALGMLGDEANKPLVVRLDGNNVEEGRRILTEANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MICLC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=sucC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28 Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = -2 Query: 286 EDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEGTNVDQG*RILKESGMTLIT 684 EDP E A DLNY+ LDG++G + NGAGL M+T+D++ + HGG PANFLD+GG A+ + ++ DE+V ++ VN+FGGI CD +A+GIV A + + A P+VVRL+G V++G RIL+E+ L+T Sbjct: 230 EDPLEAKAKANDLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGANAEVMANGLDVILGDEQVKSVFVNVFGGITACDAVANGIVKALEILGDAATKPLVVRLDGNAVEEGRRILQEANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ARTS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter sp. (strain FB24) GN=sucC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28 Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = -2 Query: 286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEGTNVDQG*RILKESGMTLIT 681 DP E A DLNY+ LDGE+G + NGAGL M+T+D++ HG PANFLD+GG AS + ++ DE+V ++ VN+FGGI CD +A GIV A ++ + P+VVRL+G NV++G RIL E+ L+T Sbjct: 231 DPLEAKAKAQDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGENHGNVKPANFLDIGGGASAEVMAAGLDVILGDEQVKSVFVNVFGGITACDAVAKGIVGALAELGHSANKPLVVRLDGNNVEEGRRILAEANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ARTCA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=sucC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28 Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = -2 Query: 286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEGTNVDQG*RILKESGMTLIT 681 DP E A DLNY+ LDGE+G + NGAGL M+T+D++ HG PANFLD+GG AS + ++ DE+V ++ VN+FGGI CD +A GIV A ++ P+VVRL+G NV++G RIL E+ L+T Sbjct: 231 DPLEAKAKAQDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGENHGNVKPANFLDIGGGASAEVMAAGLDVILGDEQVKSVFVNVFGGITACDAVAKGIVGALAELGHTANKPLVVRLDGNNVEEGRRILNEANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCUA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium ulcerans (strain Agy99) GN=sucC PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27 Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKV--PVVVRLEGTNVDQG*RILKESGMTLIT 681 DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++ + HGG PANFLD+GG AS + ++ D +V ++ VN+FGGI CD +A+GIV A + + + P+VVRL+G NV++G RIL ++ L+T Sbjct: 231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDSQVKSVFVNVFGGITSCDAVATGIVKALEILGAEANKPLVVRLDGNNVEEGRRILTDANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium smegmatis GN=sucC PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27 Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = -2 Query: 271 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTL-ITAEDLD 681 DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++ HGG PANFLD+GG AS + ++ D +V ++ VN+FGGI CD +A+GIV A + + P+VVRL+G NV++G RIL E+ L I AE +D Sbjct: 231 DPLELKAKENDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGASAAVMAAGLDVILGDSQVKSVFVNVFGGITACDAVANGIVQALQILGDEANKPLVVRLDGNNVEEGRRILAEANHPLVIQAETMD 375
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCMM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=sucC PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27 Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKV--PVVVRLEGTNVDQG*RILKESGMTLIT 681 DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++ + HGG PANFLD+GG AS + ++ D +V ++ VN+FGGI CD +A+GIV A + + + P+VVRL+G NV++G RIL ++ L+T Sbjct: 231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDSQVKSVFVNVFGGITSCDAVATGIVKALEILGAEANKPLVVRLDGNNVEEGRRILTDANHPLVT 369
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_NOCFA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nocardia farcinica GN=sucC PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27 Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = -2 Query: 268 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLIT-AEDLDD 681 DP E+ A + DLNY+ LDGE+G + NGAGL M+T+D++ HGG PANFLD+GG AS + ++ +D +V ++ VN+FGGI CD +A+GIV A + + P+VVRL+G VD+G +IL E+ L+T A+ +D+ Sbjct: 231 DPLELKAKENDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGASAEVMAAGLDVILNDAQVKSVFVNVFGGITACDAVANGIVKALEILGDEANKPLVVRLDGNKVDEGRKILVEAAHPLVTLAQTMDE 376
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27 Identity = 64/145 (44.14%), Postives = 93/145 (64.14%), Query Frame = -2 Query: 268 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 681 DP E+ A + DLNY+ LDG +G + NGAGL M+T+D++ + HGG PANFLD+GG AS + ++ +D +V ++ VN+FGGI CD +A+GIV A + + P+VVRL+G NV++G RIL E+ L+ D D Sbjct: 231 DPLELKAKENDLNYVKLDGAVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVILNDSQVKSVFVNVFGGITACDAVANGIVKALEILGDEANKPLVVRLDGNNVEEGRRILSEANHPLVIQADTMD 375 The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bpback to top |