CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium tuberculosis GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = -2
Query:  286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLIT 681
            DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++    + HGG  PANFLD+GG AS   +     ++  D++V ++ VN+FGGI  CD +A+GIV A   +      P+VVRL+G NV++G RIL E+   L+T
Sbjct:  231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDQQVKSVFVNVFGGITSCDAVATGIVKALGMLGDEANKPLVVRLDGNNVEEGRRILTEANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = -2
Query:  286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLIT 681
            DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++    + HGG  PANFLD+GG AS   +     ++  D++V ++ VN+FGGI  CD +A+GIV A   +      P+VVRL+G NV++G RIL E+   L+T
Sbjct:  231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDQQVKSVFVNVFGGITSCDAVATGIVKALGMLGDEANKPLVVRLDGNNVEEGRRILTEANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MICLC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = -2
Query:  286 EDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEGTNVDQG*RILKESGMTLIT 684
            EDP E  A   DLNY+ LDG++G + NGAGL M+T+D++    + HGG  PANFLD+GG A+   +     ++  DE+V ++ VN+FGGI  CD +A+GIV A + +  A   P+VVRL+G  V++G RIL+E+   L+T
Sbjct:  230 EDPLEAKAKANDLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGANAEVMANGLDVILGDEQVKSVFVNVFGGITACDAVANGIVKALEILGDAATKPLVVRLDGNAVEEGRRILQEANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ARTS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter sp. (strain FB24) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = -2
Query:  286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEGTNVDQG*RILKESGMTLIT 681
            DP E  A   DLNY+ LDGE+G + NGAGL M+T+D++      HG   PANFLD+GG AS   +     ++  DE+V ++ VN+FGGI  CD +A GIV A  ++  +   P+VVRL+G NV++G RIL E+   L+T
Sbjct:  231 DPLEAKAKAQDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGENHGNVKPANFLDIGGGASAEVMAAGLDVILGDEQVKSVFVNVFGGITACDAVAKGIVGALAELGHSANKPLVVRLDGNNVEEGRRILAEANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ARTCA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = -2
Query:  286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEGTNVDQG*RILKESGMTLIT 681
            DP E  A   DLNY+ LDGE+G + NGAGL M+T+D++      HG   PANFLD+GG AS   +     ++  DE+V ++ VN+FGGI  CD +A GIV A  ++      P+VVRL+G NV++G RIL E+   L+T
Sbjct:  231 DPLEAKAKAQDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGENHGNVKPANFLDIGGGASAEVMAAGLDVILGDEQVKSVFVNVFGGITACDAVAKGIVGALAELGHTANKPLVVRLDGNNVEEGRRILNEANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCUA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium ulcerans (strain Agy99) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKV--PVVVRLEGTNVDQG*RILKESGMTLIT 681
            DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++    + HGG  PANFLD+GG AS   +     ++  D +V ++ VN+FGGI  CD +A+GIV A + +  +   P+VVRL+G NV++G RIL ++   L+T
Sbjct:  231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDSQVKSVFVNVFGGITSCDAVATGIVKALEILGAEANKPLVVRLDGNNVEEGRRILTDANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium smegmatis GN=sucC PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = -2
Query:  271 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTL-ITAEDLD 681
            DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++      HGG  PANFLD+GG AS   +     ++  D +V ++ VN+FGGI  CD +A+GIV A + +      P+VVRL+G NV++G RIL E+   L I AE +D
Sbjct:  231 DPLELKAKENDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGASAAVMAAGLDVILGDSQVKSVFVNVFGGITACDAVANGIVQALQILGDEANKPLVVRLDGNNVEEGRRILAEANHPLVIQAETMD 375          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCMM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  286 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKV--PVVVRLEGTNVDQG*RILKESGMTLIT 681
            DP E+ A + DLNY+ LDG++G + NGAGL M+T+D++    + HGG  PANFLD+GG AS   +     ++  D +V ++ VN+FGGI  CD +A+GIV A + +  +   P+VVRL+G NV++G RIL ++   L+T
Sbjct:  231 DPLELKAKEHDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVVLGDSQVKSVFVNVFGGITSCDAVATGIVKALEILGAEANKPLVVRLDGNNVEEGRRILTDANHPLVT 369          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_NOCFA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nocardia farcinica GN=sucC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = -2
Query:  268 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL----HGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLIT-AEDLDD 681
            DP E+ A + DLNY+ LDGE+G + NGAGL M+T+D++      HGG  PANFLD+GG AS   +     ++ +D +V ++ VN+FGGI  CD +A+GIV A + +      P+VVRL+G  VD+G +IL E+   L+T A+ +D+
Sbjct:  231 DPLELKAKENDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGASAEVMAAGLDVILNDAQVKSVFVNVFGGITACDAVANGIVKALEILGDEANKPLVVRLDGNKVDEGRKILVEAAHPLVTLAQTMDE 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 64/145 (44.14%), Postives = 93/145 (64.14%), Query Frame = -2
Query:  268 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII----KLHGGT-PANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 681
            DP E+ A + DLNY+ LDG +G + NGAGL M+T+D++    + HGG  PANFLD+GG AS   +     ++ +D +V ++ VN+FGGI  CD +A+GIV A + +      P+VVRL+G NV++G RIL E+   L+   D  D
Sbjct:  231 DPLELKAKENDLNYVKLDGAVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMAAGLDVILNDSQVKSVFVNVFGGITACDAVANGIVKALEILGDEANKPLVVRLDGNNVEEGRRILSEANHPLVIQADTMD 375          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_MYCTU9.766e-2845.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCTA9.766e-2845.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MICLC9.766e-2845.71Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTS29.766e-2846.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTCA9.766e-2846.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCUA1.666e-2744.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCS21.666e-2745.52Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCMM1.666e-2744.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NOCFA2.176e-2744.52Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCVP2.176e-2744.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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