CF832371
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHELP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = -2 Query: 268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693 P+Q+D RE AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD V A+LVNIFGGI++CD+IA GI+ A K+V ++VPVVVRLEGTN D G +L SG+ +I AE L D Sbjct: 235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDANVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVEVPVVVRLEGTNADLGREVLANSGLDIIAAESLTD 376
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHILO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium loti GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 90/141 (63.83%), Postives = 115/141 (81.56%), Query Frame = -2 Query: 268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690 T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G PANFLDVGG AS+ +V AFKI+T D V IL+NIFGGIMKCD+IA G++ A K+V L+VP+VVRLEGTN + G +I+ +SG+ +++A+DLDD Sbjct: 246 TEEDEKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITKDPAVKGILINIFGGIMKCDIIAEGVIAAVKEVGLEVPLVVRLEGTNAELGKKIINDSGLNVVSADDLDD 386
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain GB-1) GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2 Query: 268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693 P+Q+DPRE AA +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A L D Sbjct: 235 PSQDDPREAHAASFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEHT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = -2 Query: 268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693 P+QED RE AA +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V + VPVVVRLEGTN + G +LK SG+ +I AE L D Sbjct: 235 PSQEDSREAHAASFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVSEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVNVPVVVRLEGTNAELGREVLKNSGLDIIAAESLTD 376
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_HAHCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hahella chejuensis (strain KCTC 2396) GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = -2 Query: 274 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDL 693 P+QEDPRE AAK +LNY+ L+G IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A ++V +K+PVVVRLEG N + G + L +SG+ +I AE L Sbjct: 235 PSQEDPREAHAAKWELNYVALEGNIGCMVNGAGLAMGTMDIVKLHGGAPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIGAVEEVGVKIPVVVRLEGNNAELGAKKLADSGLNIIAAESL 374
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BRAJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium japonicum GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 93/141 (65.96%), Postives = 116/141 (82.27%), Query Frame = -2 Query: 268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690 T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G PANFLDVGG+AS+ +V AFKI+T+D V ILVNIFGGIMKCDVIA G+ A ++V L VP+VVRLEGTNV+ G +I+ ESG+ ++ A++LDD Sbjct: 246 TEEDAKEIEASKYDLNYVTLDGNIGCMVNGAGLAMATMDIIKLYGMAPANFLDVGGSASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVTAAVREVGLSVPLVVRLEGTNVELGKKIILESGLNVVPADNLDD 386
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 94/140 (67.14%), Postives = 113/140 (80.71%), Query Frame = -2 Query: 268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687 +EDP+E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+ +V EAFKI+ SD+ V I VNIFGGIMKCDVIA G+V A KQV L++P+VVRLEGTNV+ G +IL ESG+ ++ AE + D Sbjct: 237 EEDPKEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVVEATKQVGLELPLVVRLEGTNVELGKKILNESGLNIVAAESMAD 376
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AGRT5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=sucC PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48 Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = -2 Query: 268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690 T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G PANF DVGG A + +V AFKI+T+D KV ILVNIFGGIMKCDVIA G++ A K+V L+VP+VVRLEGTNV+ G ++L ESG+ + A+DLDD Sbjct: 246 TEEDAKEIEASKWDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGKEPANFCDVGGGAGKEKVAAAFKIITADPKVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLQVPLVVRLEGTNVELGKKLLNESGLAITAADDLDD 386
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48 Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = -2 Query: 268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687 +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+ +V EAFKI+ SD+ V I VNIFGGIMKCDVIA G+V A +QV L +P+VVRLEGTNVD G +IL ESG+ + +AE + D Sbjct: 237 EEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVGLTLPLVVRLEGTNVDLGKKILSESGLNITSAESMAD 376
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus amyloliquefaciens (strain FZB42) GN=sucC PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48 Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = -2 Query: 268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687 +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+ +V EAFKI+ SD+ V I VNIFGGIMKCDVIA G+V A +QV L +P+VVRLEGTNVD G +IL ESG+ + +AE + D Sbjct: 237 EEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVGLTLPLVVRLEGTNVDLGKKILNESGLNITSAESMAD 376 The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bpback to top |