CF832373

Overview
NameCF832373
Unique NameCF832373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: TYDC1_ORYSJ (Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.679e-84
Identity = 141/245 (57.55%), Postives = 190/245 (77.55%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            + R  GH ++DF+ADYYK++E +PV SQV+PGYL++VLP+SAP  P++++++  D+QQ I+PG+THWQSPNYFAY+PS+ S AGFLGEMLS+ FNIVGF+WI+SPAATELE IV+DW  +ML+LP  FL +  GGGVIQGT  EA+L  L AARDR L K G+ ++ KL+VY SDQTH ALQKA QI GI  +N R +    + +Y ++P+++   ++ D+  GLIP F+CAT+GTT  +AVDPL
Sbjct:   21 QLRECGHRMVDFVADYYKSIEAFPVLSQVQPGYLKEVLPDSAPRQPDTLDSLFDDIQQKIIPGVTHWQSPNYFAYYPSNSSTAGFLGEMLSAAFNIVGFSWITSPAATELEVIVLDWFAKMLQLPSQFLSTALGGGVIQGTASEAVLVALLAARDRALKKHGKHSLEKLVVYASDQTHSALQKACQIAGIFSENVRVVIADCNKNYAVAPEAVSEALSIDLSSGLIPFFICATVGTTSSSAVDPL 265          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: TYDC2_ARATH (Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.275e-84
Identity = 144/247 (58.30%), Postives = 193/247 (78.14%), Query Frame = 2
Query:    8 RRQGHMIIDFIADYYKNVEK----YPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            R QGH+++DFIADYYKN++     +PV SQV+PGYL+ +LP+SAP  PES++ +L DV + I+PGITHWQSP+YFAY+ SS S+AGFLGEML++G ++VGF W++SPAATELE IV+DWL ++L+LP  FL +GNGGGVIQGT CEA+L  + AARDR+L K+G+  + +L+VYGSDQTH + +KA  I GI  +N R +KT  S++YG+ P+SL   I+ D+  G IP F+CAT+GTT   AVDPL
Sbjct:   66 REQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPL 312          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DDC_MOUSE (Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.233e-55
Identity = 107/255 (41.96%), Postives = 159/255 (62.35%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            EFRR+G  ++D+IADY   +E  PV   VEPGYL+ ++P +AP  PE+ E I++D+++ I+PG+THW SP +FAYFP++ S    L +ML      +GF+W +SPA TELE ++MDWLG+ML+LP++FL   +G GGGVIQG+  EA L  L AAR +V+ ++   +        + KL+ Y SDQ H ++++A  I GI +K           ++ +   +L   +  D   GLIP F+ AT+GTT   + D L
Sbjct:    5 EFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDIEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLK-----AVPSDGNFSMRASALREALERDKAAGLIPFFVVATLGTTSCCSFDNL 254          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DDC_RAT (Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.686e-55
Identity = 105/255 (41.18%), Postives = 158/255 (61.96%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            EFRR+G  ++D+IADY   +E  PV   VEPGYL+ ++P +AP  PE+ E I++D+++ I+PG+THW SP +FAYFP++ S    L +ML      +GF+W +SPA TELE ++MDWLG+ML+LP++FL   +G GGGVIQG+  EA L  L AAR +++ ++   +        + KL+ Y SDQ H ++++A  I G+ +K           +Y +   +L   +  D   GLIP F+  T+GTT   + D L
Sbjct:    5 EFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDIEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKMIRQLQAASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIK-----AIPSDGNYSMRAAALREALERDKAAGLIPFFVVVTLGTTSCCSFDNL 254          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DDC_BOVIN (Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.993e-55
Identity = 105/255 (41.18%), Postives = 156/255 (61.18%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            EFRR+G  ++D++ADY + +E   V   V+PGYL+ ++P +AP  PE+ E I++D+++ I+PG+THW SP +FAYFP++ S    L +ML      +GF+W +SPA TELE ++MDWLG+ML+LP++FL   +G GGGVIQGT  EA L  L AAR +V   +   +        + KL+ Y SDQ H +++KA  I G+ +K            + +   +L   +  D   GLIP F+ AT+GTT   + D L
Sbjct:    5 EFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIMEKLVAYASDQAHSSVEKAGLIGGVRLK-----AIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNL 254          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DDC_PIG (Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 104/255 (40.78%), Postives = 158/255 (61.96%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            +FRR+G  ++D++ADY + +E   V   V+PGYL+ ++P +AP  P++ E ILQDV++ I+PG+THW SP +FAYFP++ S    L +ML      +GF+W +SPA TELE ++MDWLG+ML+LP++FL   +G GGGVIQG+  EA L  L AAR +V+ ++   +        + KL+ Y SDQ H ++++A  I G+ +K            + +   +L   +  D   GLIP F+ AT+GTT   + D L
Sbjct:    5 DFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLK-----AIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNL 254          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DDC_HUMAN (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 104/255 (40.78%), Postives = 159/255 (62.35%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFL--FSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            EFRR+G  ++D++A+Y + +E   V   VEPGYL+ ++P +AP  P++ E I+ DV++ I+PG+THW SP +FAYFP++ S    L +ML      +GF+W +SPA TELE ++MDWLG+ML+LPK+FL   +G GGGVIQG+  EA L  L AAR +V++++   +        + KL+ Y SDQ H ++++A  I G+ +K           ++ +   +L   +  D   GLIP F+ AT+GTT   + D L
Sbjct:    5 EFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLK-----AIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNL 254          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DDC_CAVPO (Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.037e-54
Identity = 104/255 (40.78%), Postives = 159/255 (62.35%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPL 736
            EFRR+G  ++D++A+Y + +E   V   VEPGYL+ ++P SAP  PE+ E I+ D+++ I+PG+THW SP +FAYFP++ S    L +ML    + +GF+W +SPA TELE +++DWLG+ML+LP +FL   +G GGGVIQG+  EA L  L AAR +V+ ++   +        + KL+ Y SDQ H ++++A  I G+ +K          S++ +   +L   +  D   GLIP F+ AT+GTT   + D L
Sbjct:    5 EFRRRGKEMVDYVANYLEGIESRLVYPDVEPGYLRPLIPSSAPEEPETYEDIIGDIERIIMPGVTHWNSPYFFAYFPTANSYPSMLADMLCGAISCIGFSWAASPACTELETVMLDWLGKMLRLPDAFLAGNAGMGGGVIQGSASEATLVALLAARTKVIRRLQAASPELTQAAIMEKLVAYASDQAHSSVERAGLIGGVRMK-----LIPSDSNFAMRASALREALERDKAAGLIPFFVVATLGTTNCCSFDSL 254          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: L2AM_DROME (Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.407e-51
Identity = 107/256 (41.80%), Postives = 150/256 (58.59%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFS--GNGGGVIQGTTCEAILCTLTAARDRVLNKIGR--------ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            EFR  G   ID+IADY +N+    V   VEPGYL  +LP   P  PE+ + +L D+ + I PG+THWQSP+  AY+P+S S    +GEML+SGF ++GF+WI SPA TELE +VMDWL + LKLP  F  +  G GGGVIQG+  EA+L  + AAR++ +             E   +L+ Y SDQ++  ++KA  +  + ++   A        + L  D+L   I  DV  G IP+   AT+GTTG  A D ++
Sbjct:    5 EFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPA-----GEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIE 255          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCHS_DROME (Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.539e-50
Identity = 105/257 (40.86%), Postives = 153/257 (59.53%), Query Frame = 2
Query:    2 EFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF---SGNGGGVIQGTTCEAILCTLTAARDRVLNKI--------GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            E+R++G  ++D+IADY +N+ +  V   V PGY++++LPESAP   E    I  DV++ ++PGITHWQSP+  AYFP+  S+   LG+ML+   N +GF W SSPA TELE IVM+WLG+M+ LP +FL       GGGV+Q T  EA L  L A R R + +           E  ++L+ Y SDQ H +++KAA I  + ++   A          +    L   I  D++ GL+P ++CAT+GTTG  + D L+
Sbjct:    5 EYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAALIGLVRMRYIEA-----DDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLE 256          
The following BLAST results are available for this feature:
BLAST of CF832373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TYDC1_ORYSJ3.679e-8457.55Tyrosine decarboxylase 1 OS=Oryza sativa subsp. ja... [more]
TYDC2_ARATH6.275e-8458.30Probable tyrosine decarboxylase 2 OS=Arabidopsis t... [more]
DDC_MOUSE1.233e-5541.96Aromatic-L-amino-acid decarboxylase OS=Mus musculu... [more]
DDC_RAT4.686e-5541.18Aromatic-L-amino-acid decarboxylase OS=Rattus norv... [more]
DDC_BOVIN7.993e-5541.18Aromatic-L-amino-acid decarboxylase OS=Bos taurus ... [more]
DDC_PIG1.363e-5440.78Aromatic-L-amino-acid decarboxylase OS=Sus scrofa ... [more]
DDC_HUMAN1.363e-5440.78Aromatic-L-amino-acid decarboxylase OS=Homo sapien... [more]
DDC_CAVPO3.037e-5440.78Aromatic-L-amino-acid decarboxylase OS=Cavia porce... [more]
L2AM_DROME2.407e-5141.80Alpha-methyldopa hypersensitive protein OS=Drosoph... [more]
DCHS_DROME4.539e-5040.86Histidine decarboxylase OS=Drosophila melanogaster... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832373 ID=CF832373; Name=CF832373; organism=Citrus sinensis; type=EST; length=739bp
GGAATTCAGGAGGCAAGGCCACATGATCATTGACTTCATTGCTGATTACT
ACAAAAATGTCGAGAAATACCCGGTTCGAAGCCAAGTGGAACCGGGTTAT
CTCCAAAAAGTGTTGCCAGAATCCGCCCCTAACAATCCTGAGTCTATGGA
GACTATCCTCCAGGACGTACAACAACACATTGTCCCAGGTATAACGCACT
GGCAAAGTCCCAACTACTTCGCTTACTTTCCCTCAAGTGGTAGCATCGCC
GGATTTCTCGGTGAAATGCTGAGTTCTGGATTTAATATTGTGGGATTCAA
CTGGATCTCATCACCGGCTGCAACTGAGCTTGAGAATATAGTTATGGATT
GGCTTGGCCAAATGCTGAAGCTTCCCAAGTCTTTCCTTTTCTCGGGCAAT
GGTGGTGGAGTCATACAAGGAACTACATGTGAGGCCATTCTGTGCACACT
AACGGCAGCGAGAGATCGAGTTCTGAACAAGATTGGAAGAGAAAACATAT
CCAAGCTTATTGTATATGGATCTGATCAAACTCATTGTGCCCTCCAGAAA
GCTGCTCAGATTGTCGGAATCGATGTCAAGAATTTCCGAGCTATTAAGAC
AACAAAGTCTTCATCCTATGGGCTGTCGCCAGACTCACTGATGGCACAAA
TCAACTCGGATGTAGAAGTTGGACTGATCCCATTATTTCTATGTGCCACA
ATCGGGACGACTGGCATAACTGCTGTTGATCCCTTAAAG
back to top