CF832400

Overview
NameCF832400
Unique NameCF832400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:1..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832400 vs. ExPASy Swiss-Prot
Match: NASD_BACSU (Nitrite reductase [NAD(P)H] OS=Bacillus subtilis GN=nasD PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 78/273 (28.57%), Postives = 124/273 (45.42%), Query Frame = 2 
Query:   17 IIIATGSDVKSLPGITIDEKRIVS------STGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH----KAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE-YRVGKFPFLANSRA-KAIDDAEGIVK 796
            +I+ATGS    LP    D+K + +      +   LA ++  KK  VIG G +GLE       LG +V+V+  A  ++   +D    +  Q  LEKQ M F+L+ +    ++ GD     +E     + T +EAD+V+++ G  P T  LG +  G+  ++   I VN+   T IP +YA+G+      +A+       E      + + G             + T P   SV  T  Q+K  GVE +  G F      +A K  D+ +GI K
Sbjct:  105 LILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQT--EEIVGDD---RVEGLRFKDGTSIEADLVVMAVGIRPNTT-LGAES-GIPVNR--GIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKHMCG-------------IETKPYEGSVLST--QLKVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYK 353
The following BLAST results are available for this feature:
BLAST of CF832400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
NASD_BACSU5.366e-1128.57Nitrite reductase [NAD(P)H] OS=Bacillus subtilis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832400 ID=CF832400; Name=CF832400; organism=Citrus sinensis; type=EST; length=867bp
TCGTGAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCTC
TACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGCT
TTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAGGCTA
CATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAGGTCA
CTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGAAATT
CGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCATGCT
CAAAACTAAGGTGGTGGGAGTTGATTTATCTGGTGATGGTGTCAAGTTGA
CCCTTGAACCAGCAGCTGGTGGTGAAAAGACCATACTTGAAGCTGATGTT
GTTCTTGTGTCTGCTGGCCGGACTCCATTCACCGCTGGGCTCGGGCTGGA
TAAGATAGGAGTGGAAACCGATAAGATGGGACGGATACCAGTTAATGAGA
GATTTGCTACAAACATACCTGGTGTTTATGCGATTGGAGACGTAATTCCA
GGACCAATGTTAGCTCACAAGGCAGAAGAGGATGGGGTTGCTTGTGTTGA
ATTCTTAGCTGGTAAACATGGCCATGTGGACTATGATAAGGTCCCTGGAG
TTGTCTACACACACCCTGAGGTTGCTTCAGTTGGGAAGACTGAGGAGCAG
GTAAAGGAACTTGGTGTTGAGTACCGTGTGGGGAAATTCCCTTTCTTGGC
AAATAGCCGAGCAAAAGCTATTGATGATGCTGAAGGAATAGTCAAGATTT
TGGCTGAGAAAGAGACAGACAAGATATTGGGGGGTCATATTATGGCACCC
AATGCTGGAGAGCTCAT
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