CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECOLI (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12) GN=sthA PE=1 SV=5)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECOLC (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECOL5 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTTMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECOK1 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O1:K1 / APEC GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECOHS (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECODH (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECOBW (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECO8A (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O8 (strain IAI1) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECO7I (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ECO5E (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
STHA_ECOLI5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLC5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL55.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOK15.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOHS5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECODH5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOBW5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO8A5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO7I5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO5E5.378e-2838.00Soluble pyridine nucleotide transhydrogenase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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