CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBCM (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=sthA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.325e-26
Identity = 69/200 (34.50%), Postives = 114/200 (57.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            + AD +L + GRT  T  L L+ +G++ D  G++ VN  + T +  +YA+GDVI  P LA  A + G    +  + G+  H+  + +P  +YT PE++SVG+TE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  260 MRADCLLYANGRTGNTDKLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAIIHGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAFRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBCH (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae GN=sthA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.325e-26
Identity = 69/200 (34.50%), Postives = 114/200 (57.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            + AD +L + GRT  T  L L+ +G++ D  G++ VN  + T +  +YA+GDVI  P LA  A + G    +  + G+  H+  + +P  +YT PE++SVG+TE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  260 MRADCLLYANGRTGNTDKLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAIIHGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAFRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBC3 (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=sthA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.325e-26
Identity = 69/200 (34.50%), Postives = 114/200 (57.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            + AD +L + GRT  T  L L+ +G++ D  G++ VN  + T +  +YA+GDVI  P LA  A + G    +  + G+  H+  + +P  +YT PE++SVG+TE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  260 MRADCLLYANGRTGNTDKLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAIIHGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAFRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 72/201 (35.82%), Postives = 116/201 (57.71%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T  LGL+ +G+E+D  G + VN  + T +  +YA+GDVI  P LA  A + G    + +A     GH+  D +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+      G +KIL  ++T +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  259 VKADCLLYANGRTGNTDSLGLENVGLESDSRGLLKVNSMYQTALSHIYAVGDVIGYPSLASAAYDQGRIAAQAIASGEASGHLIED-IPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIAGMNVGSLKILFHRDTLQILGIHCFGERAAEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 458          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_MARAV (Soluble pyridine nucleotide transhydrogenase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAAM 750
            + AD  L   GR+  T  LGL+ +G+  +  G++ V+E + T +  +YA GDVI  P LA  A + G A    +         D VP  +YT PE++SVGKTE ++ E  V Y VG+  F   +RA+   +A G++KIL  +ET +ILG+H     A E++H     +N +  +  +         +PTM+EA + AA+
Sbjct:  258 IRADAFLWCNGRSGNTENLGLENVGLTPNSRGQLAVDEHYRTEVEHIYAAGDVIGWPSLASAAYDQGRAASSDITQDEYFRFVDDVPTGIYTIPEISSVGKTERELTEAKVPYDVGQAFFKDLARAQITGEAVGMLKILFHRETREILGIHCFGDQAAEIVHIGQAIMNQEGEANSLNYFINTTFNYPTMAEAYRVAAL 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBSL (Soluble pyridine nucleotide transhydrogenase OS=Vibrio splendidus (strain LGP32) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG----VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            + AD +L + GRT  T  L L  +G+E D  G++ VN  + T++  VYA+GDVI  P LA  A + G     A V+  A +H   D   +P  +YT PE++SVGKTE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H+    A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  260 MRADCLLYANGRTGNTDKLNLGAVGLEADSRGQVSVNSNYQTSVEHVYAVGDVIGYPSLASAAYDQGRFVAQAVVKGEAERHLIED---IPTGIYTIPEISSVGKTEQELTAAKVPYEVGRSSFKHLARAQIAGKDIGSLKILFHRETKEILGIHVFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBPA (Soluble pyridine nucleotide transhydrogenase OS=Vibrio parahaemolyticus GN=sthA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 71/200 (35.50%), Postives = 113/200 (56.50%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA-GKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            + AD +L + GRT  T  L LD +G+E+D  G++ VN  + T +  +YA+GDVI  P LA  A + G    + +  G+  +   + +P  +YT PE++SVGKTE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++     A++ E        +PTM+EA + AA+
Sbjct:  260 MRADCLLYANGRTGNTDKLSLDVVGLESDSRGQLKVNRNYQTAVEHIYAVGDVIGYPSLASAAYDQGRFVAQAITKGQAENYLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRSSFKHLARAQIAGKDVGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGQANTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEU5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD  L S GRT  T  LGL+ IG++ +  G++ V+E + T I  +YA GDVI  P LA  A + G +    +         D VP  +YT PE++S+GK E ++ +  + Y VGK  F + +RA+   +  G++KIL  +ET ++LGVH     A E++H     +N    +  I         +PTM+EA + AA
Sbjct:  259 IKADAFLWSNGRTGNTDKLGLENIGLKANSRGQVQVDEHYRTEIGNIYAAGDVIGWPSLASAAYDQGRSAAGSIVENDSWRFVDDVPTGIYTIPEISSIGKNERELTQAKIPYEVGKAFFKSMARAQISFEPVGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMNQKGPANSIKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PHOLL (Soluble pyridine nucleotide transhydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=sthA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 71/200 (35.50%), Postives = 114/200 (57.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDY-DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T  LGL  +G+E D  G + VN+ + T+   +YA+GDVI  P LA  A + G    + +   +  V   + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    ++++ E        +PTM+EA + AA+
Sbjct:  259 VKADCLLYANGRTGNTDTLGLKNVGLEADSRGLLKVNKIYQTSNENIYAVGDVIGYPSLASAAYDQGRIAAQAMTKGNAEVHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIAGMNVGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGESNTIEYFVNTTFNYPTMAEAYRVAAL 458          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEF5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 67/198 (33.84%), Postives = 113/198 (57.07%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LG++ IGV+ +  G+I V+E + T +P +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E+++ +  V Y VGK  F   +RA+   + +G++KIL  +ET ++LGVH     A E++H  +A+++   + ++ +        +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGMENIGVKVNSRGQIEVDENYRTCVPNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKGMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMSQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
STHA_VIBCM1.325e-2634.50Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBCH1.325e-2634.50Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBC31.325e-2634.50Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_SERP51.730e-2635.82Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
STHA_MARAV2.260e-2634.67Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]
STHA_VIBSL2.951e-2636.95Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBPA2.951e-2635.50Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_PSEU52.951e-2634.85Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PHOLL2.951e-2635.50Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
STHA_PSEF55.034e-2633.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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