CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_SODGM (Soluble pyridine nucleotide transhydrogenase OS=Sodalis glossinidius (strain morsitans) GN=sthA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 71/200 (35.50%), Postives = 113/200 (56.50%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T  L LDK+ +E D  G I VN  + T    +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +K+L  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  259 MKADCLLYANGRTGNTDTLKLDKVELEADSRGLIKVNSMYQTAARHIYAVGDVIGYPSLASAAYDQGRIAAQVIIKGQANVQLIENIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMNVGSLKLLFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 458          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEPF (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 67/198 (33.84%), Postives = 107/198 (54.04%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ IGV+ +  G+I V+E + T +  +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E+++ +  V Y VGK  F + +RA+   + +G++KIL  +ET ++LGVH     A E++H     +N       +         +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRTCVQNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_CHRSD (Soluble pyridine nucleotide transhydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=sthA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 74/199 (37.19%), Postives = 114/199 (57.29%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 750
            L AD  L + GRT  T  LGL+ IG+E +  G++ V+E + T +P +YA+GDVI  P LA  A + G  A  +FL      V+   +P  +YT PE++SVGK E ++ E  V Y V +  F   +RA+   D  G++KIL  +ET +ILG+H     A E++H  +A++    +A++ +        +PTM+EA + AA
Sbjct:  259 LRADAFLWANGRTGNTDELGLENIGLEPNGRGQLQVDEHYRTMVPHIYAVGDVIGWPSLASAAYDQGRSASDDFLDEDFRFVE--DIPTGIYTIPEISSVGKNERELTEAKVPYEVAQAFFKDTARAQITGDTVGMLKILFHRETLEILGIHCFGDQASEILHIGQAIMQQKGEANTLKYFINTTFNYPTMAEAYRVAA 455          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEFL (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens GN=sthA PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.913e-25
Identity = 66/198 (33.33%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LG++ IGV+ +  G+I V+E + T +  +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++ +  V Y VGK  F + +RA+   + +G++KIL  +ET ++LGVH     A E++H     +N       +         +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGMENIGVKVNSRGQIEVDENYRTCVTNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRYVNDVPTGIYTIPEISSIGKNEHELTKAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMNQPGEQNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_COLP3 (Soluble pyridine nucleotide transhydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sthA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.913e-25
Identity = 69/200 (34.50%), Postives = 110/200 (55.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYD-KVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVL-AINYDASSEDIARVCHAHPTMSEALKEAAM 750
            + AD +L + GRT  TA L L   G++ D  G++ VN+ + T +  ++A+GDVI  P LA  A + G      +            +P  +YT PE++SVGKTE+++ E  + Y VG+  F   +RA+  ++  G +KIL  +ET +ILG+H    NA E+IH  +A++   N   + E        +PTM+EA + AA+
Sbjct:  260 MRADCLLFANGRTGNTADLNLAAAGLKADGRGQLKVNDCYQTEVDNIFAVGDVIGYPSLASAAFDQGRIAASAMVDSSSKAKLIVDIPTGIYTIPEISSVGKTEQELTEAKIPYEVGRAQFKHLARAQISNNLVGSLKILFHRETKEILGIHCFGENAAEIIHIGQAIMQQTNGGNTIEYFVETTFNYPTMAEAFRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBVY (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus (strain YJ016) GN=sthA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.498e-25
Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA-GKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T  L L  +G++ D  G++ V+  + T +  VYA+GDVI  P LA  A + G    + +  GK      D +P  +YT PE++SVGKTE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  260 MKADCLLYANGRTGNTDKLNLPAVGLQGDSRGQLKVDGNYQTEVEHVYAVGDVIGYPSLASAAYDQGRFVAQAITKGKADGYLIDDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRSSFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_VIBVU (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus GN=sthA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.498e-25
Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA-GKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T  L L  +G++ D  G++ V+  + T +  VYA+GDVI  P LA  A + G    + +  GK      D +P  +YT PE++SVGKTE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  260 MKADCLLYANGRTGNTDKLNLPAVGLQGDSRGQLKVDGNYQTEVEHVYAVGDVIGYPSLASAAYDQGRFVAQAITKGKADGYLIDDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRSSFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSE14 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=sthA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-25
Identity = 68/198 (34.34%), Postives = 112/198 (56.57%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ IG++ +  G+I V+E + T++  VY  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++ +  V Y VGK  F   +RA+   +  G++KIL  +ET ++LGVH     A E++H  +A+++   +A++ +        +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENIGLKANGRGQIEVDENYRTSVSNVYGAGDVIGWPSLASAAYDQGRSAAGSMVDNGSWRYVNDVPTGIYTIPEISSIGKNEHELTQAKVPYEVGKAFFKGMARAQISGERVGMLKILFHRETLEVLGVHCFGDQASEIVHIGQAIMSQPGEANTMKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEU2 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=sthA PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 68/198 (34.34%), Postives = 112/198 (56.57%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ IG++ +  G+I V+E + T++  VY  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++ +  V Y VGK  F   +RA+   +  G++KIL  +ET ++LGVH     A E++H  +A+++   +A++ +        +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENIGLKANGRGQIEVDETYRTSVSNVYGAGDVIGWPSLASAAYDQGRSAAGSMVDNGSWRYVNDVPTGIYTIPEISSIGKNEHELTQAKVPYEVGKAFFKGMARAQISGERVGMLKILFHRETLEVLGVHCFGDQASEIVHIGQAIMSQPGEANTMKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSESM (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. tomato GN=sthA PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 68/198 (34.34%), Postives = 112/198 (56.57%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ IG++ +  G+I V+E + T++  VY  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++ +  V Y VGK  F   +RA+   +  G++KIL  +ET ++LGVH     A E++H  +A+++   +A++ +        +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENIGLKANGRGQIEVDEAYRTSVSNVYGAGDVIGWPSLASAAYDQGRSAAGSMVDNGSWRYVNDVPTGIYTIPEISSIGKNEHELTQAKVPYEVGKAFFKGMARAQISGERVGMLKILFHRETLEVLGVHCFGDQASEIVHIGQAIMSQPGEANTIKYFVNTTFNYPTMAEAYRVAA 456          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
STHA_SODGM6.575e-2635.50Soluble pyridine nucleotide transhydrogenase OS=So... [more]
STHA_PSEPF8.587e-2633.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_CHRSD8.587e-2637.19Soluble pyridine nucleotide transhydrogenase OS=Ch... [more]
STHA_PSEFL1.913e-2533.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_COLP31.913e-2534.50Soluble pyridine nucleotide transhydrogenase OS=Co... [more]
STHA_VIBVY2.498e-2535.50Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBVU2.498e-2535.50Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_PSE144.262e-2534.34Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEU25.566e-2534.34Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSESM5.566e-2534.34Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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