CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_HAHCH (Soluble pyridine nucleotide transhydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 69/199 (34.67%), Postives = 105/199 (52.76%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDA---SSEDIARVCHAHPTMSEALKEAAM 750
            + AD  L   GRT  T  LGL+ IG+E +  G++ V+  + T IP V+A GDVI  P LA  A + G +    +           VP  +YT PE++SVG+TE ++ E  V Y VG+  F   +RA+   D  G++K+L  +ET ++LG+H     A E++H     +N      + E        +PTM+EA + AA+
Sbjct:  259 IRADAFLWCNGRTGNTDNLGLENIGLEPNARGQLAVDNHYRTKIPHVFAAGDVIGWPSLASAAYDQGRSASSEIVKDDFFRFITDVPTGIYTIPEISSVGRTEAELTEAKVPYEVGQAFFKDLARAQITGDTVGMLKLLFHRETMELLGIHCFGDQASEIVHIGQAIMNQPGELNTIEYFVNTTFNYPTMAEAYRVAAL 457          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEFS (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.269e-25
Identity = 66/198 (33.33%), Postives = 112/198 (56.57%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LG++ IGV+ +  G+I V+E + T +  +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++ +  V Y VGK  F + +RA+   + +G++KIL  +ET ++LGVH     A E++H  +A+++   + ++ +        +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGMENIGVKVNSRGQIEVDENYRTCVTNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRYVNDVPTGIYTIPEISSIGKNEHELTKAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMSQPGEQNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEAE (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa GN=sthA PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.269e-25
Identity = 65/198 (32.83%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ +G++ +  G+I V+E + T++  ++A GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++    + Y VGK  F   +RA+  ++  G++KIL  +ET +ILGVH     A E++H     +N       +         +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDENYRTSVSNIFAAGDVIGWPSLASAAYDQGRSAAGNIVESDSWRFVNDVPTGIYTIPEISSIGKNESELTAAKIPYEVGKAFFKGMARAQISNEPVGMLKILFHRETLEILGVHCFGDQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEAB (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.269e-25
Identity = 65/198 (32.83%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ +G++ +  G+I V+E + T++  ++A GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++    + Y VGK  F   +RA+  ++  G++KIL  +ET +ILGVH     A E++H     +N       +         +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDENYRTSVSNIFAAGDVIGWPSLASAAYDQGRSAAGNIVESDSWRFVNDVPTGIYTIPEISSIGKNESELTAAKIPYEVGKAFFKGMARAQISNEPVGMLKILFHRETLEILGVHCFGDQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEA8 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.269e-25
Identity = 65/198 (32.83%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ +G++ +  G+I V+E + T++  ++A GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++    + Y VGK  F   +RA+  ++  G++KIL  +ET +ILGVH     A E++H     +N       +         +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDENYRTSVSNIFAAGDVIGWPSLASAAYDQGRSAAGNIVESDSWRFVNDVPTGIYTIPEISSIGKNESELTAAKIPYEVGKAFFKGMARAQISNEPVGMLKILFHRETLEILGVHCFGDQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PSEA7 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.494e-25
Identity = 64/198 (32.32%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 750
            ++AD +L   GRT  T  LGL+ +G++ +  G++ V+E + T++  ++A GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++    + Y VGK  F   +RA+  ++  G++KIL  +ET +ILGVH     A E++H     +N       +         +PTM+EA + AA
Sbjct:  259 IKADALLWCNGRTGNTDKLGLENVGIKVNSRGQVEVDENYRTSVSNIFAAGDVIGWPSLASAAYDQGRSAAGNIVESDSWRFVNDVPTGIYTIPEISSIGKNESELTAAKIPYEVGKAFFKGMARAQISNEPVGMLKILFHRETLEILGVHCFGDQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: MERA_PSEAE (Mercuric reductase OS=Pseudomonas aeruginosa GN=merA PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.494e-25
Identity = 68/195 (34.87%), Postives = 100/195 (51.28%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 750
            L AD +LV+ GRTP T  L LD  GV  +  G I +++   T+ P +YA GD    P   + A   G      + G    +D   +P VV+T P+VA+VG +E +    G+E            RA A  D  G +K++ E+ + +++GV  +AP AGELI  A LAI    + +++A     + TM E LK AA
Sbjct:  352 LRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 546          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: IRC15_YEAST (Increased recombination centers protein 15 OS=Saccharomyces cerevisiae GN=IRC15 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.494e-25
Identity = 72/217 (33.18%), Postives = 115/217 (53.00%), Query Frame = -3
Query:  130 DVVLVSAGRTPFTAGLGLDKIGV-ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA--GKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG------IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEA---AMATHDKP-IHI*E 741
            DV++VS GR P   GL +  IG+ E D +  + V  +     P +  IGDV  GPMLA KAEE  +  ++ +   G  G  +    P V+Y  P++  VG TEE + +  + Y+ G+  F  N R   +   E        +K+L +    KILGVH++  +A EL+ +A +A++   ++ D+ +V   HP++SE+ K+A   AMA    P +H+ E
Sbjct:  283 DVLMVSIGRRPLLKGLDISSIGLDERDFVENVDVQTQSLLKYPHIKPIGDVTLGPMLALKAEEQAIRAIQSIGCTGSDGTSNCGFPPNVLYCQPQIGWVGYTEEGLAKARIPYQKGRVLFSQNVRYNTLLPREENTTVSPFIKVLIDSRDMKILGVHMINDDANELLSQASMAVSLGLTAHDVCKVPFPHPSLSESFKQAVQLAMANGTSPGVHVRE 499          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: MERA_ENTAG (Mercuric reductase OS=Enterobacter agglomerans GN=merA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.240e-24
Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 750
            L AD +LV+ GRTP T  L L+  GV  +  G I +++   T+ P +YA GD    P   + A   G      + G    +D   +P VV+T P+VA+VG +E +    G+E            RA A  D  G +K++ E+ + +++GV  +AP AGELI  AVLAI    + +++A     + TM E LK AA
Sbjct:  352 LRADKLLVATGRTPNTRSLALEAAGVAVNAQGAIVIDKGMRTSSPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRLLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAA 546          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: MERA_ALCSP (Mercuric reductase OS=Alcaligenes sp. GN=merA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24
Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = -3
Query:  166 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 750
            + AD +LV+ GR P T  L L+  GV  +  G I +++   T+ P +YA GD    P   + A   G      + G    +D   +P VV+T P+VA+VG +E +    G+E            RA A  D  G +K++ E+ + +++GV  +AP AGELI  AVLAI    + +++A     + TM E LK AA
Sbjct:  350 IRADQLLVATGRAPNTRSLALEAAGVAANAQGAIVIDKGMRTSTPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAA 544          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
STHA_HAHCH5.566e-2534.67Soluble pyridine nucleotide transhydrogenase OS=Ha... [more]
STHA_PSEFS7.269e-2533.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEAE7.269e-2532.83Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEAB7.269e-2532.83Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA87.269e-2532.83Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA79.494e-2532.32Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
MERA_PSEAE9.494e-2534.87Mercuric reductase OS=Pseudomonas aeruginosa GN=me... [more]
IRC15_YEAST9.494e-2533.18Increased recombination centers protein 15 OS=Sacc... [more]
MERA_ENTAG1.240e-2434.87Mercuric reductase OS=Enterobacter agglomerans GN=... [more]
MERA_ALCSP8.037e-2433.85Mercuric reductase OS=Alcaligenes sp. GN=merA PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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