CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 60/193 (31.09%), Postives = 95/193 (49.22%), Query Frame = -3
Query:  184 DVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFL---ANSRAKAIDDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 741
            + VL++ GR   T  +GL+KIGV+  +K G+IPVN+   TN+P VYAIGD++ G P L   A + G      L G      DY  +P  V+T  E    G +EE+  E+  +  +  +  L           D+     KI+  K + ++++G H++ PNAGE+      A+    + + +      HPT  E
Sbjct:  483 NTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGE 675          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 61/193 (31.61%), Postives = 95/193 (49.22%), Query Frame = -3
Query:  184 DVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG---IVKILAEK-ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 741
            + VL++ GR   T  +GL+KIGV+  +K G+IPVN+   TN+P VYA+GD++   P L   A + G    + L G      DY  VP  V+T  E    G +EE+  E+  +  +  +  L       +   E      KI+  K + D+++G HI+ PNAGE+      A+    + + +      HPT  E
Sbjct:  540 NTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR1_RAT (Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 60/205 (29.27%), Postives = 102/205 (49.76%), Query Frame = -3
Query:  184 AAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV---GKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 774
            +   E+TI  E + VL++ GR   T  +GL+ +GV+  +K G+IPV +   TN+P +YAIGD++ G + L   A + G    + L  G     DYD VP  V+T  E    G +EE+  E   E  +     F +       + D+ +   K++   K+ ++++G H++ PNAGE + +   A     + + +      HP  +E
Sbjct:  273 STNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGE-VTQGFAAAKCGLTKQQLDSTIGIHPVCAE 476          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR1_PONAB (Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 59/197 (29.95%), Postives = 102/197 (51.78%), Query Frame = -3
Query:  184 EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 747
            E + VL++ GR   T  +GL+ +GV+  +K G+IPV +   TN+P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PNAGE+      A+    + + +      HP  +E
Sbjct:  283 EYNTVLLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 477          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TYTR_LEIDO (Trypanothione reductase OS=Leishmania donovani GN=TPR PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = -3
Query:  178 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACV---EFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 741
            D V+++ G  P +  L LDK GV T K G + V+    T++  +YAIGDV    ML   A  +G ACV       GK    D+ KV   V++ P + + G TEE+     E    Y     P + N         E +++I+  +   ++LGVH++  +A E+I    + +   A   D       HPT +E L
Sbjct:  279 DQVMLAIG-VPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDVTNRVMLTPVAINEG-ACVLLETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNYETVAVYASSFTPLMHN--ISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHSTIGVHPTSAEEL 468          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 58/197 (29.44%), Postives = 102/197 (51.78%), Query Frame = -3
Query:  184 EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 747
            E + V+++ GR   T  +GL+ +GV+  +K G+IPV +   TN+P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PNAGE+      A+    + + +      HP  +E
Sbjct:  283 EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 477          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 58/197 (29.44%), Postives = 102/197 (51.78%), Query Frame = -3
Query:  184 EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 747
            E + V+++ GR   T  +GL+ +GV+  +K G+IPV +   TN+P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PNAGE+      A+    + + +      HP  +E
Sbjct:  433 EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 627          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TYTR_TRYCR (Trypanothione reductase OS=Trypanosoma cruzi GN=TPR PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = -3
Query:  178 LEPAAGGEKTI-------LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPFLAN---SRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 783
            +E  A G K++       ++ D+V+++ GR+P T  L L   GV   K G + V+E   TN+  +YAIGDV    ML   A  +  A V+ + G +    D+ +V   V++ P + + G  EE      E+   Y     P + N   S+ K       + KI+       +LGVH++  NA E+I    + +  +A   D       HPT +E L
Sbjct:  259 VELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSFTPLMHNISGSKYKTF-----VAKIITNHSDGTVLGVHLLGDNAPEIIQGVGICLKLNAKISDFYNTIGVHPTSAEEL 468          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: YMER_STAAU (Uncharacterized 19.7 kDa protein in mercuric resistance operon OS=Staphylococcus aureus PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 49/172 (28.49%), Postives = 88/172 (51.16%), Query Frame = -3
Query:  193 LGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVIPG---PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPT 696
            + L+K  +E  K G + VNE   + + P VYA GD       P+    + +  V     L G    ++Y  +P  V+T P++ASVG +EE+ K  G   +V +         K  ++     K+L +++ D+I+G H+++  A ELI+    AI +  S++++ ++  A+PT
Sbjct:    1 MNLEKGNIERKKHG-VHVNEYLQSVSNPNVYAAGDAAATDGLPLTPVASADSHVVASNLLKGNSKKIEYPVIPSAVFTVPKMASVGMSEEEAKNSGRNIKVKQKNISDWFTYKRTNEDFAAFKVLIDEDHDQIVGAHLISNEADELINHFATAIRFGISTKELKQMIFAYPT 171          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: GSHR_CAEEL (Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 62/202 (30.69%), Postives = 89/202 (44.06%), Query Frame = -3
Query:  184 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM-GRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF-----PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 765
            G   + E D V+ +AGR P    L LD  GV TDK  G+I  +E    +  GVYA+GD++     L   A + G    + L       V +D V   V+T  E+++VG TEE+  +   E  +  F     PF              +  +    E+ KILG+H + PNA E+I    +A     S  D+      HP  SE
Sbjct:  280 GNGGVEEYDTVIWAAGRVPNLKSLNLDNAGVRTDKRSGKILADEFDRASCNGVYAVGDIVQDRQELTPLAIQSGKLLADRLFSNSKQIVRFDGVATTVFTPLELSTVGLTEEEAIQKHGEDSIEVFHSHFTPFEYVVPQNKDSGFCYVKAVCTRDESQKILGLHFVGPNAAEVIQGYAVAFRVGISMSDLQNTIAIHPCSSE 481          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
TRXR3_MOUSE2.344e-1531.09Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
TRXR3_HUMAN3.061e-1531.61Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
TRXR1_RAT3.061e-1529.27Thioredoxin reductase 1, cytoplasmic OS=Rattus nor... [more]
TRXR1_PONAB3.998e-1529.95Thioredoxin reductase 1, cytoplasmic OS=Pongo abel... [more]
TYTR_LEIDO5.222e-1530.41Trypanothione reductase OS=Leishmania donovani GN=... [more]
TRXR1_PIG6.820e-1529.44Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
TRXR1_HUMAN6.820e-1529.44Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
TYTR_TRYCR1.163e-1428.70Trypanothione reductase OS=Trypanosoma cruzi GN=TP... [more]
YMER_STAAU1.286e-1328.49Uncharacterized 19.7 kDa protein in mercuric resis... [more]
GSHR_CAEEL1.286e-1330.69Probable glutathione reductase 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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