CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:351..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: GSHRP_SOYBN (Glutathione reductase, chloroplastic OS=Glycine max GN=GR PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 54/187 (28.88%), Postives = 94/187 (50.27%), Query Frame = -3
Query:  184 VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELG-VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 735
            ++ + GR P T  LGL+ +GV+  K G I V+E   T++  ++A+GDV     L   A  +G A V+ L        DY  VP  V++ P +  VG TEEQ V++ G ++     F  L  + +   D     +K++   +T+++LG+H+   +A E++    +A+    +  D       HP+ +E
Sbjct:  328 IMFATGRRPNTQNLGLESVGVKLAKDGAIEVDEYSQTSVYSIWAVGDVTNRINLTPVALMEGGALVKTLFQDNPTKPDYRAVPSAVFSQPPIGQVGLTEEQAVQQYGDIDIFTANFRPLKATLSGLPDRV--FMKLVVCAKTNEVLGLHMCGEDAPEIVQGFAVALKARLTKADFDATVGIHPSAAE 512          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_PECCC (Soluble pyridine nucleotide transhydrogenase (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=sthA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 41/116 (35.34%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  163 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 501
            + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:   28 EDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMNVGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 143          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: XECC_XANP2 (2-oxopropyl-CoM reductase, carboxylating OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecC PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 50/167 (29.94%), Postives = 75/167 (44.91%), Query Frame = -3
Query:  298 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP----------FLANSR------AKAIDDAEGIVKILAEKETDKILGVH 750
            +E D V +  G  P +A L    +G++    G + VNE   T++P VYA+GD+I GPM   KA + G      + G+         P  ++TH EV+ +G  EE+ +  G E    K P            A+ R       K      G  KI+ + +T K+LG H
Sbjct:  303 IETDFVFLGLGEQPRSAELA-KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAH 468          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR1_DROME (Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 63/213 (29.58%), Postives = 95/213 (44.60%), Query Frame = -3
Query:  163 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE--------YRVGKFPFLANSRAKAIDDAEGIVKILAEKETD-KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAM 765
            GE+     D VL + GR      L L   GV   K  +IPV+ + ATN+  +YA+GD+I G P L   A   G +       G    +DY  V   V+T  E A VG +EE  VK+ G +        Y+  +F F+     +        +K +AE+  D ++ G+H + P AGE+I     A+    +   +      HPT +E     A+
Sbjct:  376 GEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEF-FIPQKSVRYC-----YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAI 581          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR_PLAF5 (Thioredoxin reductase OS=Plasmodium falciparum (isolate FCH-5) GN=TR PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 62/215 (28.84%), Postives = 95/215 (44.19%), Query Frame = -3
Query:  181 EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG-RIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFLANS---RAKAIDDAEG----------IVKILAEKETD-KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEA 762
            +KT    D VL + GR     GL L+ + +  +K   +I  +    TNIP ++A+GDV    P LA  A + G      L      + DY  +P  +YT  E  + G +EE+  EL     VE  + +F  L  S   R K I   +           + K++  K  D +++G H + PNAGE+     LA+      +D       HPT +E+
Sbjct:  301 DKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAES 515          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: TRXR2_PLAF7 (Thioredoxin reductase 2 OS=Plasmodium falciparum (isolate 3D7) GN=trxr2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 62/215 (28.84%), Postives = 95/215 (44.19%), Query Frame = -3
Query:  181 EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG-RIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFLANS---RAKAIDDAEG----------IVKILAEKETD-KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEA 762
            +KT    D VL + GR     GL L+ + +  +K   +I  +    TNIP ++A+GDV    P LA  A + G      L      + DY  +P  +YT  E  + G +EE+  EL     VE  + +F  L  S   R K I   +           + K++  K  D +++G H + PNAGE+     LA+      +D       HPT +E+
Sbjct:  377 DKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAES 591          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
GSHRP_SOYBN1.680e-1328.88Glutathione reductase, chloroplastic OS=Glycine ma... [more]
STHA_PECCC6.383e-1335.34Soluble pyridine nucleotide transhydrogenase (Frag... [more]
XECC_XANP25.403e-1229.942-oxopropyl-CoM reductase, carboxylating OS=Xantho... [more]
TRXR1_DROME1.204e-1129.58Thioredoxin reductase 1, mitochondrial OS=Drosophi... [more]
TRXR_PLAF57.803e-1128.84Thioredoxin reductase OS=Plasmodium falciparum (is... [more]
TRXR2_PLAF77.803e-1128.84Thioredoxin reductase 2 OS=Plasmodium falciparum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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