CF832415

Overview
NameCF832415
Unique NameCF832415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 121/217 (55.76%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOK1 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O1:K1 / APEC GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 121/217 (55.76%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 79/217 (36.41%), Postives = 122/217 (56.22%), Query Frame = 2 
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
The following BLAST results are available for this feature:
BLAST of CF832415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_SHIDS9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIBS9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOUT9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLI9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLC9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOK19.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOHS9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECODH9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOBW9.327e-3536.41Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01N08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832415 ID=CF832415; Name=CF832415; organism=Citrus sinensis; type=EST; length=747bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCATGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCAGGCCGTGGCAAAA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCA
back to top