CF832415

Overview
NameCF832415
Unique NameCF832415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:611..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ G  FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +++N     NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D + R P +    + L W P   + + + +TL +
Sbjct:  449 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDF 650          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +IEN     NG I N+GNP NE ++RQL E +   +    + G         +V S+ FYG+GY D   R P +    Q +GW P   L + +  TL +
Sbjct:  449 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSETIGKTLDF 650          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.297e-33
Identity = 78/217 (35.94%), Postives = 121/217 (55.76%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+  PFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYHIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSCYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.297e-33
Identity = 78/211 (36.97%), Postives = 118/211 (55.92%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G I K RW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L +M+   + K         P      V S  +YG+GY D + R P +    + L W P   + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENTGNRCDGEIINIGNPDNEASIEELGKMLLASFDKHPLRQHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPTIDMQETIDETLDFFLRT 652          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 77/207 (37.20%), Postives = 117/207 (56.52%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALSV (Bifunctional polymyxin resistance protein arnA OS=Salmonella schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 77/207 (37.20%), Postives = 117/207 (56.52%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 77/207 (37.20%), Postives = 117/207 (56.52%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 77/207 (37.20%), Postives = 117/207 (56.52%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + L W P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.140e-32
Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ G  FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D +EA+  +I+N     NG I N+GNP NE ++RQL E +   +    +           DV SK FYG GY D + R P +    + L W P   + + + +TL +
Sbjct:  449 EDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRSNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIANAKRLLDWTPTVEMRETIGNTLDF 650          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.140e-32
Identity = 78/206 (37.86%), Postives = 114/206 (55.34%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++LVDGG  +R F  I+D IEA+  +IEN   R +G I N+G+P NE ++ Q+AE++   +    +            V SK FYG+GY D   R P +    + L W P   + + +  TL +
Sbjct:  448 EDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLD---SLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKGNRCDGQIINIGSPDNEASILQMAEVLLGKFEAHPLRHHFPPFAGFKRVESKSFYGDGYQDVSHRRPSIKNARRLLDWEPTIEMEETIGKTLDF 650          
The following BLAST results are available for this feature:
BLAST of CF832415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_PSEF51.759e-3338.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE141.759e-3338.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIFL2.297e-3335.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ESCF32.297e-3336.97Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI3.000e-3337.20Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALSV3.000e-3337.20Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK3.000e-3337.20Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA3.000e-3337.20Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF1.140e-3238.35Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS41.140e-3237.86Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832415 ID=CF832415; Name=CF832415; organism=Citrus sinensis; type=EST; length=747bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCATGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCAGGCCGTGGCAAAA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCA
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