CF832422

Overview
NameCF832422
Unique NameCF832422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  263 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 505
            I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   19 IEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.423e-22
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  263 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 505
            I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   19 IEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.427e-22
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = -3
Query:  266 PDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 496
            P +  I  A+E+A  DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P SDV IETHKE+EL
Sbjct:   19 PGERLIDIASEKA--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.061e-22
Identity = 44/76 (57.89%), Postives = 60/76 (78.95%), Query Frame = -3
Query:  266 DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 493
            +D+ +L+AAEEA LDLP+SC +GACSSC GKVV G ++Q +Q+FLD++Q+ +GFVL C  YP +D TI TH+E  L
Sbjct:   23 EDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.061e-22
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = -3
Query:  266 PDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 496
            P +  I   +E+A  DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P SDV IETHKE+EL
Sbjct:   19 PGERLIDIGSEKA--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.020e-20
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I   +D+ IL+ A E G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+ +GF L C  YP S+ TI+TH+E  L
Sbjct:   19 IEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.272e-20
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = -3
Query:  266 DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 493
            +++ ILDAAE+  ++LP+SC++G+CSSC  KVV G VDQSEQ FLD++Q+ +GF++ C +YP SD TI TH+E  L
Sbjct:   23 ENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.272e-20
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            EI   +D  IL++AE AGL+LPYSCR+G C +C GK+VSG VDQS  SFL+++QI +G++LTC A P  D  + THK+ +L
Sbjct:   67 EIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -3
Query:  266 DSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            D  +LD+A+ AG+DLP SC  G C++C  +++SG VDQ +   +  +   +G+ L C AYP SD+ IETHKE+EL
Sbjct:   22 DQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: PAAE_ECOLI (Probable phenylacetic acid degradation NADH oxidoreductase paaE OS=Escherichia coli (strain K12) GN=paaE PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  287 DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP-TSDVTIE 493
            DD  ILDAA   G DLPY+C+ G C++C  KV+ G V       L+ D++  G+VL+C A P TSDV ++
Sbjct:  280 DDESILDAALRQGADLPYACKGGVCATCKCKVLRGKVAMETNYSLEPDELAAGYVLSCQALPLTSDVVVD 349          
The following BLAST results are available for this feature:
BLAST of CF832422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FERH_ANAVT8.341e-2358.02Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FERH_ANASP1.423e-2258.02Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FER2_EQUTE2.427e-2267.53Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_PLEBO7.061e-2257.89Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER2_EQUAR7.061e-2266.23Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_FREDI1.020e-2055.00Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERV_ANAVT2.272e-2055.26Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER4_ARATH2.272e-2054.32Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER2_SYNP61.290e-1546.67Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
PAAE_ECOLI3.288e-1145.71Probable phenylacetic acid degradation NADH oxidor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832422 ID=CF832422; Name=CF832422; organism=Citrus sinensis; type=EST; length=510bp
GGGAGTGCGGACCCCCTTTTTTTTTTTTTTTTATAGAACGGTACCATGTT
CGGATGGGATGANAAACCTCTCCCTCTAGGTACGATGCGCATTCATGGCC
GGGGCAATTACTACAANCTTCTTTGCAACAAGAAATAAAAACACATTACA
AGAATCATTCTCAAATTACTCAATATCCCTTTCAAAGCATTAAAATAATC
AGACAAAACACAACACATAAAAGAGAAGATAATAATGAGATATCAAGAGC
ACATTATTAACCAGCGAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACAT
CACTTGTTGGATAAGCAGCACAAGTGAGAACAAAACCTTCTCCAATTTGA
TCATCATCCAGAAAGCTTTGCTCCGACTGGTCAACGGTTCCAGACACAAC
TTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGGAAGAT
CAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACAG
TTGATTTCTT
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