CF832422

Overview
NameCF832422
Unique NameCF832422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:290..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.201e-30
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I    D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GT+DQS+QSFLDDDQ G GFVLTC AY TSD TI TH+EE L
Sbjct:   15 IEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.202e-29
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = -3
Query:  263 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 505
            I CP D+++LDAAE+ GLDLPYSCRAGACSSC GKV +G+V+Q + SFLD++Q+  G+VLTC AYPTSDVTIETHKEE+L+
Sbjct:   17 ITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.569e-29
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:   62 EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.050e-29
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I CP D+++LDAAEE+GLDLPYSCRAGACSSC GKV +G V+Q + SFL+++Q+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   17 ITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.677e-29
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            ++    DS+ILDAAEEAG+DLPYSCRAG+CSSC GKV SGTVDQS+QSFLDDDQ+  GFVLTC AY TSD TI TH+EE L
Sbjct:   14 KVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.496e-29
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = -3
Query:  266 CPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 499
            CP DS+ILD AEE GL+LPYSCRAG+CSSC GKV++G++DQS+Q+FLDDDQ G+G+ LTC  YPTSDVTI+TH E EL
Sbjct:   16 CPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.496e-29
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I+C DD F+LDAAEE G++LPYSCRAGACS+C GKV  G +DQSEQ+FLDDDQ+G GFVLTC AYP SD T+  H+E+EL
Sbjct:   19 IDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.496e-29
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E  CPDD +ILD AEE G+ LPYSCRAG+CSSC GKV +G V+QS+ SFLDDDQI EG+VLTC AY  SDVTIETHKEEEL
Sbjct:   15 EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.964e-29
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = -3
Query:  266 NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 502
            NC +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTVDQ++QSFLDDDQ+  G+VLTC AYP+SD TI TH E+EL
Sbjct:   20 NCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 7.789e-29
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I  PDD +ILD AEE G+DLPYSCRAGACS+C GK+  G +DQS+QSFLDDDQI  G+VLTC AYP SD TI TH+EEEL
Sbjct:   19 IEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
The following BLAST results are available for this feature:
BLAST of CF832422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER2_DUNSA9.201e-3076.25Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER2_PHYES1.202e-2970.37Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_SOLLC1.569e-2972.84Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER2_PHYAM2.050e-2971.25Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER1_DUNSA2.677e-2974.07Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_PERBI3.496e-2971.79Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_ODOSI3.496e-2970.00Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_MEDSA3.496e-2974.07Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_PORYE5.964e-2970.89Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_SYNP47.789e-2971.25Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832422 ID=CF832422; Name=CF832422; organism=Citrus sinensis; type=EST; length=510bp
GGGAGTGCGGACCCCCTTTTTTTTTTTTTTTTATAGAACGGTACCATGTT
CGGATGGGATGANAAACCTCTCCCTCTAGGTACGATGCGCATTCATGGCC
GGGGCAATTACTACAANCTTCTTTGCAACAAGAAATAAAAACACATTACA
AGAATCATTCTCAAATTACTCAATATCCCTTTCAAAGCATTAAAATAATC
AGACAAAACACAACACATAAAAGAGAAGATAATAATGAGATATCAAGAGC
ACATTATTAACCAGCGAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACAT
CACTTGTTGGATAAGCAGCACAAGTGAGAACAAAACCTTCTCCAATTTGA
TCATCATCCAGAAAGCTTTGCTCCGACTGGTCAACGGTTCCAGACACAAC
TTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGGAAGAT
CAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACAG
TTGATTTCTT
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