CF832422

Overview
NameCF832422
Unique NameCF832422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:290..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.266e-28
Identity = 57/81 (70.37%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG VD S+ SFL+DD +  G+VLTC AY  SDV IETHKEEE+
Sbjct:   16 EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.266e-28
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VDQSE SFLDD Q+ EGFVLTC A P SD+ IETHKEEEL
Sbjct:   15 LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.960e-28
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I TH+EEEL
Sbjct:   17 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.049e-28
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = -3
Query:  266 NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 502
            +C +D++ILDAAEEAG++LPYSCRAGACS+C GKV  G+VDQS+QSFLDD+Q+ +G+VLTC AYP SD TI TH E+EL
Sbjct:   20 DCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.049e-28
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE SFLDD Q+ EGFVLTC A P SD+ IETHKEEEL
Sbjct:   15 LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.594e-28
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  266 EINCPDDSFILD-AAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E   PDD +ILD AAEE G DLPYSCRAG+CSSC GKV +G+VDQS+ S+LDDDQ+  G+VLTC AYPTSDVTIETHKEEEL
Sbjct:   15 EFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.594e-28
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG     +QSFLDDDQI  G++LTC AYPT D  IETHKEE L
Sbjct:   17 ITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.612e-28
Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = -3
Query:  266 NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 502
            +C +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTVDQS+QSFLDD+Q+ +G+VLTC AYP SD TI TH E+EL
Sbjct:   19 DCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.125e-27
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E    DD FILDAAEEAG+DLPYSCRAGACS+C G++V G VDQSE SFL+DD   +GFVLTC AYP SD  I THKE EL
Sbjct:   17 EFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.125e-27
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  263 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 505
            I  PDD +ILDAAEEAGLDLP+SCR+G+CSSC G +  GTVDQS+Q+FLDDDQI  G VLTC AYPTS+  IETH+E+ +A
Sbjct:   19 IEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99          
The following BLAST results are available for this feature:
BLAST of CF832422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER_PANGI2.266e-2870.37Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER1_EQUTE2.266e-2875.00Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_SYNLI2.960e-2871.25Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_PORPU5.049e-2869.62Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER1_EQUAR5.049e-2873.75Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_ARCLA6.594e-2874.39Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER_APHSA6.594e-2870.00Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_PORUM8.612e-2869.62Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER2_RAPSA1.125e-2770.37Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER2_NOSMU1.125e-2769.14Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832422 ID=CF832422; Name=CF832422; organism=Citrus sinensis; type=EST; length=510bp
GGGAGTGCGGACCCCCTTTTTTTTTTTTTTTTATAGAACGGTACCATGTT
CGGATGGGATGANAAACCTCTCCCTCTAGGTACGATGCGCATTCATGGCC
GGGGCAATTACTACAANCTTCTTTGCAACAAGAAATAAAAACACATTACA
AGAATCATTCTCAAATTACTCAATATCCCTTTCAAAGCATTAAAATAATC
AGACAAAACACAACACATAAAAGAGAAGATAATAATGAGATATCAAGAGC
ACATTATTAACCAGCGAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACAT
CACTTGTTGGATAAGCAGCACAAGTGAGAACAAAACCTTCTCCAATTTGA
TCATCATCCAGAAAGCTTTGCTCCGACTGGTCAACGGTTCCAGACACAAC
TTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGGAAGAT
CAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACAG
TTGATTTCTT
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