CF832423

Overview
NameCF832423
Unique NameCF832423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:289..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   65 EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+ PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:   19 IDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   18 EIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            +E  CPDD +ILD AEE G++LPYSCRAG+CSSC GK+V G +DQS+QSFLDD+QI EG+VLTCAAYP SDV IETHKEEEL G
Sbjct:   13 KEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+CPDD +ILDAAEE G+DLPYSCRAGACS+C GKV +G+VDQS+QSFLDD QIG+GFVLTC AYPTSD TI TH+EE L
Sbjct:   17 IDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+ PDD +ILD AE+ GLDLPYSCRAGACS+C GK+VSGTVDQS+QSFLDDDQI +G+VLTC AYPTSD+ IETHKEE+L
Sbjct:   19 IDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   18 EIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   18 EIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C G + SGT+DQS+QSFLDDDQI  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   17 ETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
The following BLAST results are available for this feature:
BLAST of CF832423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER1_SPIOL3.166e-3276.54Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_ANAVT3.166e-3278.75Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_NOSMU4.135e-3277.78Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER_LEUGL4.135e-3273.81Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_GUITH4.135e-3277.50Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER_DATAR4.135e-3274.70Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER1_NOSMU4.135e-3277.50Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP4.135e-3277.78Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO4.135e-3277.78Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_SPIPL5.401e-3275.61Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832423 ID=CF832423; Name=CF832423; organism=Citrus sinensis; type=EST; length=494bp
GAAGAAATCAACTGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGA
AGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCT
GTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT
CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTA
TCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTG
GTTAATAATGTGCTCTTGATAACACATTATTATCTTCTCTTTTATGTGTT
GTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTG
AGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTG
TAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTTTCTC
ATCCCATCCGAACATGGTACCGTTCTATAAAAAAAAAAAAAAAA
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