CF832442

Overview
NameCF832442
Unique NameCF832442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 54/138 (39.13%), Postives = 76/138 (55.07%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 679
            E+ YPYTG +G  CKF ++ I   V    N ++ +  E + A  LV+  P++V    V   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WGE+GY+K+ MG+N+CGV +  S
Sbjct:  224 EEAYPYTGKNG-ICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTP-------YWLIKNSWGADWGEDGYFKMEMGKNMCGVATCAS 351          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 55/165 (33.33%), Postives = 74/165 (44.85%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSG------------------------------FAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E  YPYT   G +C F+KS I A +  +  I++  +    N  +HGP++V I+A     Q Y  G+     C    LDHGVL+VGYG  G                                 +R K   YWI+KNSWG +WG  GY  +   R N CG+ S+ S
Sbjct:  208 ESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSS 372          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = -1
Query:  269 EKDYPYTGTDGGSCKFDKSKIAAAVSNFS-VISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 679
            E DYPY  ++   C+ D +K    V   +  I+  E+++   L   GP+ V I+A  +  Y  G+   Y     L+H VL+VGYG            PYWI+KNSWG +WGE G++KI    N CG+ + ++S A I+
Sbjct:  195 ENDYPYESSNN-YCRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAIDASDILNYEQGI-IKYCANNGLNHAVLLVGYGVEN-------NVPYWILKNSWGTDWGEQGFFKIQQNVNACGIKNELASTAEIN 323          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = -1
Query:  302 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGV 679
            +KDYPY G DG   +  K+     + ++  + +  ++     V H P+++ I A     Q Y  G+     CG  LDHGV+ VGYG+          K YWI++NSWG++WGE+GY +  M RN+      CG+
Sbjct:  221 DKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIF-DGSCGTQLDHGVVAVGYGTEN-------GKDYWIVRNSWGKSWGESGYLR--MARNIASSSGKCGI 344          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = -1
Query:  296 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDS 679
            E  YPY   D  SC+FD + I A  +    +   E+ +   +   GP++V I+A     Q Y  GV     C   +LDHGVL VGYG+          K YW++KNSWG +WG+ GY K+   R N CG+ S
Sbjct:  191 ESSYPYEAEDR-SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTES-------TKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIAS 314          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVS 679
            E+DYPYT  DG      +S+   ++  F  +  +++      V H P++V I+A     Q Y  GV     CG  LDHGV+ VGYG+            YW ++NSWG +WGENGY  I M RNV      CG+  M S
Sbjct:  241 EEDYPYTAMDGKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGR-CGTNLDHGVVAVGYGTDAATGAA-----YWTVRNSWGPDWGENGY--IRMERNVTARTGKCGIAMMAS 371          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = -1
Query:  296 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDS 679
            E  YPY G DG  C+++     A ++ F  +   ED + A +   GP+  GI+A     + Y GG+     C    + HGVL+VGYG  G   I      YW+IKNSWG+ WG  GY K+   + N CG+ S
Sbjct:  200 EATYPYEGKDG-PCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKG---IETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIAS 327          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E+ YPY   DG SCK+      A  + F  I   E  +   +   GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG+ WG +GY KI   R N CG+ +  S
Sbjct:  199 EESYPYEAKDG-SCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDK---YWLVKNSWGKEWGMDGYIKIAKDRNNHCGLATAAS 329          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 679
            E+ YPYTG +G  C +    +   V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+CG+ +  S
Sbjct:  230 EEAYPYTGVNG-ICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCGIATCAS 357          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E+ YPY  TD  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  199 EESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
The following BLAST results are available for this feature:
BLAST of CF832442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CYSP3_SOLLC1.669e-1639.13Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CYSP2_DICDI1.669e-1633.33Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CATV_NPVEP1.669e-1635.51Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
RD21A_ARATH4.857e-1634.33Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP3_HOMAM4.857e-1637.88Digestive cysteine proteinase 3 OS=Homarus america... [more]
CYSP1_ORYSJ4.857e-1637.41Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CATR_MOUSE4.857e-1637.12Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATL1_RAT4.857e-1638.52Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
ORYC_ORYSJ6.343e-1636.23Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATL2_BOVIN6.343e-1638.52Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832442 ID=CF832442; Name=CF832442; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTAAAAAAAGAAAATATTAATACCATCTTCAATAA
CAATTCTGTAGCATGGTTAACTATAAAATAGATAAATATTACATTCTGAC
ATGACATATGCTTAAATATTACAAGAGCATAGAAAGTTCATGCCTCAGCC
CAGGCATGTAGGCATCGTTATAATTGCAGACGGATATTTAAAAGGATATC
CTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGCACAACCTCCATAA
TGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGATGAGACCATGGAGT
CGACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCT
CCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTT
GAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCACTC
CATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATA
TATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTT
CACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAAATAACACTGAAAT
TAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCG
TCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCG
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