CF832442

Overview
NameCF832442
Unique NameCF832442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E+ YPY  TD  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  199 EESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 679
            E+ YPY G +G  CKF    +   V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+ GY+K+ MG+N+CGV +  S
Sbjct:  228 EESYPYQGVNG-ICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVR--PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVP-------YWLIKNSWGADWGDEGYFKMEMGKNMCGVATCAS 355          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  302 EKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 679
            E DYPY G++   C  D  KIA  +++ F     DE+++   +   GP+A+ ++A+ +  Y  G+     C  Y L+H VL++G+G            PYWIIKNSWGE+WGENG+ ++    N CG+
Sbjct:  239 EADYPYQGSEQ-MCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGILNQ--CHIYDLNHAVLLIGWGIEN-------NVPYWIIKNSWGEDWGENGFLRVRRNVNACGL 356          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = -1
Query:  293 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSM 679
            E  YPY   +G  C+++    +A ++ F V+   ED +   +   GP+A G++ +    + Y  GV     C  Y++H VL+VGYG  G          YW+IKNSWG+ WG  GY KI   R N C + S+
Sbjct:  210 EATYPYERKEG-VCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGKRWGLRGYMKIAKDRNNHCAIASL 337          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 52/136 (38.24%), Postives = 73/136 (53.68%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-SSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            EK YPY   D  SC F+K  + A    F+ I   DE +MA  +   GP++V I+A     Q Y  GV + P    + LDHGVL+VG+G+          + YW++KNSWG  WG+ G+ K+   + N CG+ S  S
Sbjct:  239 EKSYPYEAIDD-SCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG------EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASS 367          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 52/135 (38.52%), Postives = 69/135 (51.11%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E+ YPY   DG SCK+      A  + F  I   E  +   +   GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG  WG  GY KI   R N CG+ +  S
Sbjct:  199 EESYPYEAKDG-SCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNK---YWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAAS 329          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = -1
Query:  272 REKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 682
            +E DYPY       C     K A  V N        ++   +L++H GP+A+ ++AV +  Y GGV   +     L+H VL+VGYG            PYW IKNSWG ++GENGY +I  G N CG+ + ++S A I
Sbjct:  208 QEYDYPYKAVRL-PCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIEN-------NVPYWTIKNSWGSDYGENGYVRIRRGVNSCGMINELASSAQI 336          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 679
            E  YPY G DG  C++     +A ++++  +  +E  +   +   GP++  I+A     + Y GG+     C  Y ++H VL+VGYGS G          YW+IKNSWGE WG NGY +I     N CG+ S+ S
Sbjct:  199 EATYPYEGKDG-PCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVK---DGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLAS 329          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E+ YPY G +  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  199 EESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAAS 330          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E  YPY G DG  C++     +A ++ F  +  +E  +   +   GP++  I+A     + Y GGV     C  Y+ +H VL+VGYG  G          YW+IKNSWGE WG NG+ KI   R N CG+ S  S
Sbjct:  199 EATYPYEGKDG-PCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQAS 329          
The following BLAST results are available for this feature:
BLAST of CF832442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CATL1_BOVIN6.343e-1638.52Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CYSP2_MAIZE8.284e-1636.96Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATV_NPVHZ8.284e-1636.72Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATQ_RAT1.082e-1534.85Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATL_DROME1.082e-1538.24Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL1_MOUSE1.082e-1538.52Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATV_NPVMC1.846e-1536.96Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATJ_MOUSE1.846e-1535.56Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATL1_PIG2.410e-1537.78Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CATJ_RAT2.410e-1537.04Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832442 ID=CF832442; Name=CF832442; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTAAAAAAAGAAAATATTAATACCATCTTCAATAA
CAATTCTGTAGCATGGTTAACTATAAAATAGATAAATATTACATTCTGAC
ATGACATATGCTTAAATATTACAAGAGCATAGAAAGTTCATGCCTCAGCC
CAGGCATGTAGGCATCGTTATAATTGCAGACGGATATTTAAAAGGATATC
CTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGCACAACCTCCATAA
TGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGATGAGACCATGGAGT
CGACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCT
CCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTT
GAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCACTC
CATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATA
TATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTT
CACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAAATAACACTGAAAT
TAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCG
TCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCG
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