CF832442

Overview
NameCF832442
Unique NameCF832442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 50/136 (36.76%), Postives = 65/136 (47.79%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 679
            E  YPY G +G  CKF+  K  A V N  ++  +DE  M   +  + P++           Y  GV     C K  D   H VL VGYG             YWI+KNSWG NWG NGY+ I  G+N+CG+ +  S
Sbjct:  200 EDSYPYIGKNG-QCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLL-------YWIVKNSWGSNWGNNGYFLIERGKNMCGLAACAS 327          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 679
            E+ YPY G  G  C++     AA V +F  I   E+ +   + K GP++V ++A     Q Y  G+     C + +L+H VL+VGYG  G          YW++KNSWGE WG  GY KI     N CG+ ++ +
Sbjct:  199 EESYPYIGP-GRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEES---DGNSYWLVKNSWGEEWGMKGYIKIAKDWNNHCGIATLAT 329          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = -1
Query:  317 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR 679
            E+ YPY    G SCK+      A V+++  I S E+++   L   GP++  I+A     + Y  G+     C    +DHGVL+VGYG+ G      + K YWIIKNSWG +WG +GY K+   R
Sbjct:   20 EESYPYHA-QGDSCKYRPENSVANVTDYWDIPSKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSEDVDHGVLVVGYGADG---TETENKKYWIIKNSWGTDWGMDGYIKMAKDR 139          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 49/138 (35.51%), Postives = 68/138 (49.28%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKI-AAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV----CGVDSMVS 679
            E DYPY   DG  C  ++      ++  F  +  ++++     V H P++V I A     Q Y  GV     CG  LDHGV+ VGYG+          K YWI++NSWG  WGE+GY ++    NV    CG+  M S
Sbjct:  226 EDDYPYKAVDG-KCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGR-CGTSLDHGVVAVGYGTDN-------GKDYWIVRNSWGPKWGESGYVRMERNINVTTGKCGIAMMAS 354          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = -1
Query:  260 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTTS 679
            E  YPYTG DG  CK + ++       ++     E ++   L + GP++V I+ V +  Y  GV+        L+HGVL+VGYG          +  YW +KNSWG +WGE G+++I    N CG+ +  ++ A + ++S
Sbjct:  216 EAPYPYTGVDG-VCK-NTTRYVQLSGCYAYDLRSEKKLRQVLHEKGPVSVAIDVVDLTNYKSGVAKHCSVDHGLNHGVLLVGYGQEN-------DVKYWTLKNSWGSDWGEQGFFRIKRDVNSCGILNQFAASAILSSSS 346          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 53/148 (35.81%), Postives = 80/148 (54.05%), Query Frame = -1
Query:  272 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVG--INAVWMQTYIG-----GVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 679
            E  +PYT  D   CK  ++ +    S++  +       +E  M   LVKHGP+AV   ++  ++  + G     G+S P+   +  +H VL+VGYG      I      YWIIKNSWG NWGE+GY++I  G + C ++S+  +VAAI
Sbjct:  318 ESCFPYTAKDS-PCKPRENCLRYYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIE-----YWIIKNSWGSNWGESGYFRIRRGTDECAIESI--AVAAI 457          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E  YPY  TD   C++D    AA  S ++ +    ED +   +   GP+ VG++A     ++   GV     C + ++HGVL++GYG           K YW++KNSWG N+GE GY ++   + N CG+ S  S
Sbjct:  200 EASYPYKATDQ-KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGD-------LNGKEYWLVKNSWGSNFGEQGYIRMARNKGNHCGIASYPS 326          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 51/136 (37.50%), Postives = 67/136 (49.26%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E+ YPYT  D   C++     AA  + F  I    ++     V   GP++V I+A     Q Y  G+     C    LDHGVL+VGYG  G        K YWI+KNSWGE WG+ GY  +   R N CG+ +  S
Sbjct:   86 EESYPYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEG-------GKKYWIVKNSWGEKWGDKGYIYMAKDRKNHCGIATAAS 214          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 50/136 (36.76%), Postives = 65/136 (47.79%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 679
            E  YPY G D  SC+F+  K  A V N  ++  +DE  M   +  + P++           Y  GV     C K  D   H VL VGYG             YWI+KNSWG  WGENGY+ I  G+N+CG+ +  S
Sbjct:  200 EDSYPYIGKDS-SCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLL-------YWIVKNSWGSQWGENGYFLIERGKNMCGLAACAS 327          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 679
            E+ YPY G +G  C +     A  V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG   D   H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+C + +  S
Sbjct:  229 EESYPYKGVNG-VCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVR--PVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCAIATCAS 356          
The following BLAST results are available for this feature:
BLAST of CF832442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CATH_RAT2.410e-1536.76Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
TEST2_MOUSE3.148e-1535.56Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATL1_FELCA3.148e-1537.90Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
ORYB_ORYSJ4.111e-1535.51Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CATV_GVXN4.111e-1532.86Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATC_MOUSE4.111e-1535.81Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATS_SAIBB5.370e-1534.07Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATL1_CHICK5.370e-1537.50Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATH_MOUSE5.370e-1536.76Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
ALEU_HORVU5.370e-1536.23Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832442 ID=CF832442; Name=CF832442; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTAAAAAAAGAAAATATTAATACCATCTTCAATAA
CAATTCTGTAGCATGGTTAACTATAAAATAGATAAATATTACATTCTGAC
ATGACATATGCTTAAATATTACAAGAGCATAGAAAGTTCATGCCTCAGCC
CAGGCATGTAGGCATCGTTATAATTGCAGACGGATATTTAAAAGGATATC
CTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGCACAACCTCCATAA
TGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGATGAGACCATGGAGT
CGACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCT
CCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTT
GAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCACTC
CATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATA
TATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTT
CACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAAATAACACTGAAAT
TAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCG
TCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCG
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