CF832442

Overview
NameCF832442
Unique NameCF832442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQT--YIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM-GRNVCGVDSMVS 679
            +  YPY  TD   C ++    AA  S +  +   DED +   +   GP++VGI+A       Y  GV     C   ++HGVL+VGYG+          K YW++KNSWG N+G+ GY ++    +N CG+ S  S
Sbjct:  210 DASYPYKATDE-KCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGT-------LDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCS 336          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = -1
Query:  272 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVGINA----------VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 679
            E  +PYTGTD   CK  +       S +  +       +E  M   LV HGP+AV              ++  T   G+  P+   +  +H VL+VGYG+   + +      YWI+KNSWG  WGE+GY++I  G + C ++S+  +   I
Sbjct:  319 EACFPYTGTDS-PCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT---GLRDPFNPFELTNHAVLLVGYGTDSASGM-----DYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIAVAATPI 460          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = -1
Query:  269 EKDYPYTGTDGGSCKFDKSKIAAAVSNFS-VISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 679
            E DYPY  T  G C+ + ++    V +    I   E+++   L   GP+ V I+A  +  Y  G+     C  + L+H VL+VGY             PYWI+KN+WG +WGE+GY+++    N CG+ + + S A I+
Sbjct:  196 ESDYPYE-TANGQCRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAIDASDIVNYRRGIMRQ--CANHGLNHAVLLVGYAVEN-------NIPYWILKNTWGTDWGEDGYFRVQQNINACGIRNELVSSAEIY 324          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = -1
Query:  329 YPYTGTDGGSCKFDKSKIAAAVS--NFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 670
            Y YTG D  +CK  + K    V+     V+  +++      V + P++V I+A  M  Y  GV        + DH VLIVGYG+S        E  YW+I+NSWG  WGE GY ++
Sbjct:  216 YGYTGEDTAACKAIEMKTTRVVTINGHEVVPVNDEMSLKKAVAYQPISVMISAANMSDYKSGVYKGACSNLWGDHNVLIVGYGTSS------DEGDYWLIRNSWGPEWGEGGYLRL 325          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E  YPY G D  SC ++ +  AA    +  I   +E  +   + + GP++V I+A     Q Y  GV     C +  ++H VL+VGYG+        K   YWIIKNSWGE+WG  GY  +   + N CG+ ++ S
Sbjct:  198 EDAYPYVGQDE-SCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQ-------KGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLAS 325          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = -1
Query:  272 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVGINA----------VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 679
            E  +PYTGTD   C+  +       S +  +       +E  M   LV  GP+AV              V+  T   G+  P+   +  +H VL+VGYG+   + +      YWI+KNSWG +WGENGY++I  G + C ++S+  +   I
Sbjct:  319 EDCFPYTGTDS-PCRLKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHQGPMAVAFEVYDDFLHYRKGVYHHT---GLRDPFNPFELTNHAVLLVGYGTDAASGL-----DYWIVKNSWGTSWGENGYFRIRRGTDECAIESIALAATPI 460          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 46/136 (33.82%), Postives = 64/136 (47.06%), Query Frame = -1
Query:  278 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 679
            EKDYPY G  G    F K+    ++  +  + + ++      + + P++V I A     Q Y  G+     CG  LDH V+ VGYGS            YWI++NSWG  WGE GY  I M RN+    S    +A
Sbjct:  229 EKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGS-CGTNLDHAVVAVGYGSENGVD-------YWIVRNSWGPRWGEEGY--IRMERNLAASKSGKCGIA 354          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 46/147 (31.29%), Postives = 67/147 (45.58%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPI------------RFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E  YPY   + G C++      A +S++  +++  +    + V   P++V I+A     Q Y  G+   P    + LDHGVL VGYGS   +                    YWI+KNSWG +WG  GY  +   R N CG+ S  S
Sbjct:  195 ESSYPYKA-ENGKCEYKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRNRDNNCGIASSAS 340          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = -1
Query:  287 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 679
            E  YPY G D  SC ++ +  AA    +  I   +E  +   + + GP++V I+A     Q Y  GV     C +  ++H VL+VGYG+        K   +WIIKNSWGE+WG  GY  +   + N CG+ +M S
Sbjct:  198 EDAYPYVGQDE-SCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQ-------KGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMAS 325          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = -1
Query:  302 EKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 679
            E  YPY   D  +C++D   I A VS++    S DE  +   +   GP++V I+A      +Y GGV     C   Y +H V  VGYG+            YWI+KNSWG  WGE+GY K+   R N C +
Sbjct:  191 ESSYPYKAIDD-NCRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDSWYANHAVTAVGYGTDA------NGGDYWIVKNSWGAWWGESGYIKMARNRDNNCAI 314          
The following BLAST results are available for this feature:
BLAST of CF832442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CATS_MOUSE7.754e-1434.81Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATC_PONAB1.013e-1331.13Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATV_NPVOP1.323e-1333.09Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CPR2_ARATH2.256e-1336.21Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATK_RAT2.256e-1335.29Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATC_BOVIN2.256e-1331.13Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
GCP1_ARATH2.947e-1333.82Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP5_DICDI3.848e-1331.29Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATK_MOUSE3.848e-1335.29Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CRUST_PANBO5.026e-1336.64Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832442 ID=CF832442; Name=CF832442; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTAAAAAAAGAAAATATTAATACCATCTTCAATAA
CAATTCTGTAGCATGGTTAACTATAAAATAGATAAATATTACATTCTGAC
ATGACATATGCTTAAATATTACAAGAGCATAGAAAGTTCATGCCTCAGCC
CAGGCATGTAGGCATCGTTATAATTGCAGACGGATATTTAAAAGGATATC
CTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGCACAACCTCCATAA
TGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGATGAGACCATGGAGT
CGACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCT
CCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTT
GAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCACTC
CATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATA
TATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTT
CACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAAATAACACTGAAAT
TAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCG
TCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCG
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