CF832446

Overview
NameCF832446
Unique NameCF832446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 51/134 (38.06%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ESIYG  F DE + +L+    GL++MANAGP  NGSQFF T      L+ +H +FGKV    D VY +
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTVYNM 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ES+YG  F DE + +L+    GL++MANAGP  NGSQFF T      L+ +H +FGKV    D VY +
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTVYNM 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 51/134 (38.06%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ESIYG  F DE + +L+    GL++MANAGP  NGSQFF T      L+ +H +FGKV    D VY +
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTVYNM 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ES++G+ F DE + +L+    GL++MANAGP  NGSQFF T      L+ +H +FGKV    D +Y +
Sbjct:   21 AGEIDIELWSKEAPKACRNFVQLCLEG----------YYDNTIFHRVVPEFIIQGGDPTGTGTGG-ESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTIYNI 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 49/134 (36.57%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  191 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVE 589
            G + + LF   VPK  ENF   C+            +Y  + FHR+I +FMLQ            ESI+ + F DE      H   G+LSMAN G +TNGSQFFIT     +LD +H +FG+++   D +  +E
Sbjct:  289 GPLNLELFAPKVPKACENFITHCSNG----------YYNNTKFHRLIKNFMLQGGDPTGTGHGG-ESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIE 411          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPIL2_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae GN=CYP8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  191 GRIVMGLFGKAVPKTAENFRALC-TGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVE 589
            G + + L+ +  PK   NF  L  TG           +YKG  FHR IP+FM+Q            +S++G+ F DE +  + H G G LSMAN G +TN SQFF     T  LD +H VFGKV+  ++V+ K+E
Sbjct:  332 GDLTIELYPEFAPKAVWNFIKLSQTG-----------YYKGVAFHRNIPNFMIQGGDPSGSGRGG-QSVWGKYFDDEFDGPMTHNGRGTLSMANKGKNTNSSQFFFAYKPTPHLDRKHTVFGKVVENINVLSKME 454          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.074e-14
Identity = 50/134 (37.31%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ESIYG  F DE + +L+    GL++MANAG   NGSQFF T      L+ +H +FGKV    D VY +
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTVYNM 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.074e-14
Identity = 50/134 (37.31%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ESIYG  F DE + +L+    GL++MANAG   NGSQFF T      L+ +H +FGKV    D VY +
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTVYNM 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.074e-14
Identity = 50/134 (37.31%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  188 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKV 586
            AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q            ESIYG  F DE + +L+    GL++MANAG   NGSQFF T      L+ +H +FGKV    D VY +
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG--DTVYNM 141          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPI1_STAS1 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1821 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.345e-13
Identity = 62/181 (34.25%), Postives = 74/181 (40.88%), Query Frame = 2
Query:  143 ITNKVDFDVEIAGKPA--------GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFIT----------------------------TVTTSWLDGRHVVFGKVLSVMDVV 577
            +TN    + EI G           G +   L     PKT ENF           K+G   +Y G TFHR+I  FM+Q            ESIYGE F DE  K      G LSMANAGP TNGSQFFI                             T  T WLD +H VFG+++   D +
Sbjct:    1 MTNYPQLNTEINGNEIKLIMHTNKGDMTFKLLPDVAPKTVENFVTHA-------KNG---YYNGVTFHRVINDFMVQGGDPTATGMGG-ESIYGEPFEDEFSKEAFNIYGALSMANAGPHTNGSQFFIVQMNEVPESMLSQLADGGWPEPIVKAYAETGGTPWLDQKHTVFGQLIEGKDTL 170          
The following BLAST results are available for this feature:
BLAST of CF832446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
SDC10_MOUSE2.450e-1538.06Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
SDC10_RAT3.200e-1537.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]
SDC10_BOVIN3.200e-1538.06Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]
SDC10_XENLA4.180e-1535.82Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]
CYP4_CAEEL4.180e-1536.57Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL2_GIBZE9.312e-1538.52Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibb... [more]
SDC10_PONAB2.074e-1437.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA2.074e-1437.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
SDC10_HUMAN2.074e-1437.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]
PPI1_STAS11.345e-1334.25Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832446 ID=CF832446; Name=CF832446; organism=Citrus sinensis; type=EST; length=599bp
GCCGGTGACTGCAGAATGAGAAACAACGAAGTGATATATGGCTTCAACAA
ATTTGCTTCCACTCACGATGCTATGGGCTGTTATCCTGTTGGCCACTTTC
TCTATAATTCTGGCGAAAAAATCGGATCAGAATTTGAAAGAAATCACAAA
CAAAGTTGACTTTGACGTTGAGATTGCCGGAAAACCTGCCGGACGTATTG
TAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATTTCCGA
GCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGTGGGAAGCCACTCCA
CTACAAGGGAAGTACGTTTCATAGGATTATTCCCAGCTTTATGCTTCAAG
GAGGTGATTTCACTCTTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGA
GAGAAGTTCCCTGACGAAAATTTCAAACTGAAGCACACCGGCCCAGGGCT
TTTGTCAATGGCAAATGCTGGGCCAGACACCAATGGTTCACAATTCTTCA
TTACAACTGTGACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGA
AAGGTGCTATCGGTGATGGATGTAGTTTACAAGGTTGAAGCTGAAGGGA
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