CF832450

Overview
NameCF832450
Unique NameCF832450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832450_ssr57 microsatellite CF832450_ssr57:57..66. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832450_ssr221 microsatellite CF832450_ssr221:221..232. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:385..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_OLILU (Histone H2B OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 2
Query:  248 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            +ETY  YI+KVLKQVHPD GIS + M IMNSFINDIFE+LA EASRLARYNK+ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTKFTS+
Sbjct:   24 VETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_HOLTU (Histone H2B OS=Holothuria tubulosa PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A EASRLA YN+K TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYSIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNRKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BL1_PSAMI (Late histone H2B.2.1 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ND+FE++A EASRLA YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B6_WHEAT (Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.450e-35
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2
Query:  245 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFT 514
            S ETYKIYIFKVLKQ+ P++GISSK+M I+NS INDIFEKLA E+++LARYNKKPTITSREIQTAVRLV PGELAKHAVSEGTKAVT+FT
Sbjct:   30 SNETYKIYIFKVLKQIDPNMGISSKSMSIINSIINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVFPGELAKHAVSEGTKAVTRFT 119          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.893e-35
Identity = 72/90 (80.00%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A EASRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   17 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAGEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 106          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BL2_PSAMI (Late histone H2B.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.893e-35
Identity = 72/90 (80.00%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ND+FE++A EASRL++YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLSQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BL1_STRPU (Late histone H2B.L1 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.893e-35
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A EASRLA YNKK TITSRE+QT VRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTVVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35
Identity = 73/90 (81.11%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSRAMVIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 73/90 (81.11%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMIIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B1A_HUMAN (Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A EASRLA Y+K+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126          
The following BLAST results are available for this feature:
BLAST of CF832450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_OLILU1.110e-3581.32Histone H2B OS=Olisthodiscus luteus PE=1 SV=2[more]
H2B_HOLTU1.110e-3580.00Histone H2B OS=Holothuria tubulosa PE=3 SV=1[more]
H2BL1_PSAMI1.110e-3581.11Late histone H2B.2.1 OS=Psammechinus miliaris PE=3... [more]
H2B6_WHEAT1.450e-3583.33Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 S... [more]
H2BL4_STRPU1.893e-3580.00Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BL2_PSAMI1.893e-3580.00Late histone H2B.2.2 OS=Psammechinus miliaris PE=3... [more]
H2BL1_STRPU1.893e-3580.00Late histone H2B.L1 OS=Strongylocentrotus purpurat... [more]
H2BE_STRPU3.230e-3581.11Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2BE2_PSAMI4.218e-3581.11Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]
H2B1A_HUMAN4.218e-3581.11Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832450 ID=CF832450; Name=CF832450; organism=Citrus sinensis; type=EST; length=748bp
TTTACTCTTATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCT
TGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAG
AAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGC
CGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCA
AAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATC
GAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGA
TATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACG
ATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAAT
AAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGT
ACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTG
TTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGAA
TTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTA
CTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTTTGGTGGATTT
TTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCAGGTGATGT
GCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTCGGAAAG
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