CF832450

Overview
NameCF832450
Unique NameCF832450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_COCIM (Histone H2B OS=Coccidioides immitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   48 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 137
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_CHAGB (Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_ASPTN (Histone H2B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_ASPOR (Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   50 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 139
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_ASPNC (Histone H2B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   50 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 139
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_ASPFU (Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_ASPCL (Histone H2B OS=Aspergillus clavatus GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2B_AJECA (Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   47 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 136
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: H2BS1_STRPU (Histone H2B.1, sperm OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.091e-34
Identity = 68/90 (75.56%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            E+Y IYI+KVLKQVHPD GISS+ M IMNSF+ND+FE++A EASRL +YN++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   50 ESYGIYIYKVLKQVHPDTGISSRGMSIMNSFVNDVFERVAAEASRLTKYNRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 139
[Close]
BLAST of CF832450 vs. ExPASy Swiss-Prot
Match: HSB1_PICST (Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.955e-34
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 2 
Query:  251 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 520
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129
The following BLAST results are available for this feature:
BLAST of CF832450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_COCIM3.571e-3477.78Histone H2B OS=Coccidioides immitis GN=HTB1 PE=3 S... [more]
H2B_CHAGB3.571e-3477.78Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV... [more]
H2B_ASPTN3.571e-3477.78Histone H2B OS=Aspergillus terreus (strain NIH 262... [more]
H2B_ASPOR3.571e-3477.78Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=... [more]
H2B_ASPNC3.571e-3477.78Histone H2B OS=Aspergillus niger (strain CBS 513.8... [more]
H2B_ASPFU3.571e-3477.78Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 ... [more]
H2B_ASPCL3.571e-3477.78Histone H2B OS=Aspergillus clavatus GN=htb1 PE=3 S... [more]
H2B_AJECA3.571e-3477.78Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 ... [more]
H2BS1_STRPU6.091e-3475.56Histone H2B.1, sperm OS=Strongylocentrotus purpura... [more]
HSB1_PICST7.955e-3476.67Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832450 ID=CF832450; Name=CF832450; organism=Citrus sinensis; type=EST; length=748bp
TTTACTCTTATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCT
TGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAG
AAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGC
CGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCA
AAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATC
GAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGA
TATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACG
ATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAAT
AAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGT
ACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTG
TTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGAA
TTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTA
CTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTTTGGTGGATTT
TTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCAGGTGATGT
GCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTCGGAAAG
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