CF832467

Overview
NameCF832467
Unique NameCF832467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT01_SOLTU (Patatin-01 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 84/215 (39.07%), Postives = 126/215 (58.60%), Query Frame = -2
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL++S ++    +++P F     ++ + ML+LSLGTGT  + +  + A + +KWG  +W+       I  +     S + D+++S +FQ   S++NYLR+Q++ L+G    AD A+E NM+ L + G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR
Sbjct:  185 CYSTAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALLSVS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLR 381          
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PATA2_SOLTU (Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 83/215 (38.60%), Postives = 125/215 (58.14%), Query Frame = -2
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C S  AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL++S ++    +++P F     ++ + ML+LSLGTGT  + +  + A + +KWG  +W+       I  +     S + D+++S +FQ   S++NYLR+Q++ L+G    AD A+E NM+ L + G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR
Sbjct:  185 CYSAAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALLSVS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLR 381          
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.413e-31
Identity = 83/215 (38.60%), Postives = 125/215 (58.14%), Query Frame = -2
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAPTY PPHY  T ++ +G     +LVDG VA   +P LL++S ++    +++P F     ++ + ML+LSLGTGT  + +  + A + +KWG  +W+       I  +     S + D+++S +FQ   S++NYLR+Q++ L+G    AD A+E NM+ L + G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR
Sbjct:  184 CYSTAAAPTYFPPHYFAT-NTINGDKYELNLVDGAVATVADPALLSVS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENPLTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLR 380          
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.151e-31
Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = -2
Query:  162 STFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSD-IVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 794
            ST AAPTY PPHY  T  S+ G    F+LVDG VA   +P LL+IS ++  + +++P F     ++ + ML+LSLGTGT  + +  Y A +A+ W    W+       ++   +D  S  + D+++S  FQ+  SK+NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS  N E           T EEAL  FAKLLS++ KLR
Sbjct:  186 STAAAPTYFPPHYFVTNTSN-GDEYEFNLVDGAVATVADPALLSIS-VATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWML------VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE-----------TYEEALKRFAKLLSDRKKLR 380          
The following BLAST results are available for this feature:
BLAST of CF832467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT01_SOLTU3.723e-3239.07Patatin-01 OS=Solanum tuberosum PE=2 SV=1[more]
PATA2_SOLTU1.415e-3138.60Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU2.413e-3138.60Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]
PAT17_SOLCD3.151e-3140.19Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832467 ID=CF832467; Name=CF832467; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTATTTAATAGTAATAATCTTATTAATTCCCCCTTTC
CAATTGGAAGCACTTTTGAGTCGGATTGATTACACCTAAAAACACGCATG
CGGAATCCTTATGCCTTACTCAAATAAAACGAGTTTCAAATTAAAAGACT
TATTGGCGGCGGCGGAGCTTAAGTTGTTCAGAGAGTAATTTGGCAAAGTG
AGCAAGTGCTTCTTCATTTGTGACCTCTCCGTCAACCTTCTCATATCTGC
CAGTCTCCAGGTTCACCCTCGACACCTGCTCCTTCAACAACTTGGTTCCA
GTTTCCACAAGCCTTTGCATATTCTCCTCCGTGGCAATGTCAGCAGATGC
TGCATCACCACTCAACGTGTCGTCCTGAATTCGAAGGTAGTTGTCCTTGC
TTCCGCAGGATTGAAAGAGAGCAGACATATGGAAATCAACAATATCGGAG
CCTCCATCAGAGTAGATGTCGAGTATTGGGGTATTGCCATCTTCATAGAT
CCATTCGAAAATGCCCCACTTGGAGGCTTTGGCTGCATTGTACTTCAATT
CTTTCTTGGCTGTACCTGTGCCTAGTGATAGTACCAGCATATCTCTACCG
TCCATTGGGTTTTTGTCCCTGAACTGGGGGTTCTGCTTCACCATTTCCTT
CGATATGTGGCTTATTGCCAATAGGGTAGGGTTATTGGCAGCAACTCCGC
CATCAACAAGATCAAAAGTGCGGGTTCCGCCACTGTCACTGTCCTTAGTC
TCCAAGTAATGAGGTGGGAGGTAAGTGGGCGCTGCAAAAGTGCTGATGCA
T
back to top