CF832468

Overview
NameCF832468
Unique NameCF832468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT11_SOLTU (Patatin-11 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.496e-43
Identity = 99/217 (45.62%), Postives = 132/217 (60.83%), Query Frame = 1
Query:  103 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            G+ +TVLS                FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AAKDI  FY +HGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP Y PPH+  T  S +G T  F+LVDGGVA   +P LL
Sbjct:   26 GEMVTVLSTDGGGIKGIIPGIIPEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALL 228          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PATB2_SOLTU (Patatin-B2 OS=Solanum tuberosum GN=PATB2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.178e-43
Identity = 106/228 (46.49%), Postives = 135/228 (59.21%), Query Frame = 1
Query:   79 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AAKDI  FY EHGP IF      N+S SI        LGP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP Y PPH+  T  S +G    F+LVDG VA   +P LL
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------LGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGARYEFNLVDGAVATVGDPALL 227          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.178e-43
Identity = 100/217 (46.08%), Postives = 133/217 (61.29%), Query Frame = 1
Query:  103 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M++ PN+   PF AAK+I  FY EHGP+IF              +   ++LGPKYDGKYL  ++ E LG+  V + LT VVI +FDIK  +PVIF+ ++   +   +A++ DI  ST+AAPTY PPHY  T  S +G    F+LVDG VA   +P LL
Sbjct:   26 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIF--------------NPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALL 227          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PATJ1_SOLTU (Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 98/214 (45.79%), Postives = 130/214 (60.75%), Query Frame = 1
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP Y PPH+  T  S +G T  F+LVDGGVA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALL 228          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT01_SOLTU (Patatin-01 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.077e-42
Identity = 102/238 (42.86%), Postives = 140/238 (58.82%), Query Frame = 1
Query:   40 SF*LQEALSI*NKMATAGSAEGKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            SF +   + +    +T  S E + +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:    6 SFLILSVMILATTSSTFASLE-EMVTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALL 228          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.936e-42
Identity = 97/214 (45.33%), Postives = 131/214 (61.21%), Query Frame = 1
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T+M+T PN+   PF AA +I  F+ EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ +D  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSFDIKTNKPVIFTKSDLAKSPELDAKMYDICYSTAAAPTYFPPHYF-TTNTINGDKYEFNLVDGAVATVADPALL 228          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PT1K2_SOLTU (Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.037e-41
Identity = 97/214 (45.33%), Postives = 130/214 (60.75%), Query Frame = 1
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   17 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYKFNLVDGAVATVADPALL 216          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PATA3_SOLTU (Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.037e-41
Identity = 97/214 (45.33%), Postives = 130/214 (60.75%), Query Frame = 1
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGVKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALL 228          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT02_SOLTU (Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.037e-41
Identity = 97/214 (45.33%), Postives = 130/214 (60.75%), Query Frame = 1
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALL 228          
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.016e-41
Identity = 97/214 (45.33%), Postives = 128/214 (59.81%), Query Frame = 1
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FL  +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP Y PPHY  T  S +G    F+LVDGGVA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLGGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALL 228          
The following BLAST results are available for this feature:
BLAST of CF832468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT11_SOLTU5.496e-4345.62Patatin-11 OS=Solanum tuberosum PE=2 SV=1[more]
PATB2_SOLTU7.178e-4346.49Patatin-B2 OS=Solanum tuberosum GN=PATB2 PE=1 SV=1[more]
PAT17_SOLCD7.178e-4346.08Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]
PATJ1_SOLTU2.089e-4245.79Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1[more]
PAT01_SOLTU6.077e-4242.86Patatin-01 OS=Solanum tuberosum PE=2 SV=1[more]
PATD2_SOLTU7.936e-4245.33Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PT1K2_SOLTU1.037e-4145.33Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 ... [more]
PATA3_SOLTU1.037e-4145.33Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT02_SOLTU1.037e-4145.33Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 P... [more]
PAT12_SOLTU3.016e-4145.33Patatin-12 OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832468 ID=CF832468; Name=CF832468; organism=Citrus sinensis; type=EST; length=749bp
TAATTTCGAATCCTAATAGCTGCTCAATCTGATCGTACTTCTTTTTAACT
TCAAGAAGCTCTTTCAATTTGAAATAAAATGGCCACTGCCGGTTCTGCAG
AAGGAAAGAAAATAACAGTTCTGAGCATCGATGGAGGTGGCATTCGAGGC
ATTATTCCTGGCACTATTTTAGCTTTTCTTGAATCCAAGCTCCAGGAATT
GGATGGACCAAGTGCAAGAATTGCAGATTATTTTGATGTAGTAGCAGGAA
CAAGCACCGGCGGATTGGTAACCACCATGCTTACGGCACCCAACAAGGAA
GGCGGACCTTTCATTGCTGCAAAGGATATCAATAATTTTTATCTCGAGCA
CGGTCCTAAAATTTTCCCTCAAATTAGCCGCAGCAACTTCTCGGAATCGA
TTGCAAGCTCTATCGATAAACGGCTGCTTGGACCAAAGTATGATGGGAAG
TACCTGCGGGCACTAGTGAACGAGCTACTAGGAGACGTTACTGTGAAAGA
GACTCTTACCAACGTGGTTATACCAACTTTTGACATAAAGCTTCTTCAGC
CAGTCATCTTCTCAACCACCGATGGAAAAGAGAACGTTTTGAAGAATGCT
CGGCTGGCTGATATATGCATCAGCACTTCTGCAGCGCCCACTTACCTCCC
ACCTCACTACTTGGAGACTAAGGACAGTGACAGTGGCGGAACCCGCACTT
TTGATCTTGTTGATGGCGGAGTTGCTGCCAATAACCCTACCCTATTGGC
back to top