CF832478

Overview
NameCF832478
Unique NameCF832478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10752 contig Csv1_Contig10752:199..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 69/260 (26.54%), Postives = 110/260 (42.31%), Query Frame = 2
Query:    8 LPLPLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            LP   IYSP+Y      + K+      +   +   + +     +  IV+P  AS E++   H+++YL+ LQ  S        +     L  +C     +        GGTI AA+   +     AIN  GG+HH   DE  GFC   D  L I    ++    R++ +DLD H G+G E  FS  S+V  + +  F+PG +P   +         R+    V +  G    +Y    +  L+     F+P+ V+   G D
Sbjct:   14 LPPVYIYSPEYVSICDSLVKV----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAR (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MRSA252) GN=acuC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 64/245 (26.12%), Postives = 112/245 (45.71%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L +   L    IV+P  A+ ++L+++H   Y+++++ + +  II E   +    N     +  +  R     VGG +  A L    G A+N   +GGG HH       GFC Y DI++   Y   + N  RV+IID DAH G+G +  F +D+ V    +   G  ++P    +  + ++  ++  G T N  L+   E           +E    +F P++++   G DI
Sbjct:   25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPVVKSFKPDIILSVNGVDI 263          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 68/256 (26.56%), Postives = 112/256 (43.75%), Query Frame = 2
Query:   23 IYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            +YSP+Y  +   + K+     ++   +   + + G L    +V+P  AS E++ V H++SYL+ L   S    +   +     L  +C V   + + +   VGG  L A    L  +   AIN  GG+HH   DE  G C   D  L I    ++    RV+ +D+D H G+G E  FS  S+V  + +  F+PG +P   +         R+    V    G   + Y +     ++     F+PE V+   G D
Sbjct:   20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDSYLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDVAINWAGGWHHAKKDEASGSCYVNDAVLGI--LKLREKYDRVLYVDVDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTFTSVMQEVKALFNPEAVVMQLGAD 268          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 69/252 (27.38%), Postives = 116/252 (46.03%), Query Frame = 2
Query:   62 EKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVVHSESYLKSLQSSPNVS---IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM-------FNPGIYPRDY-EARRFIDQKVEV---VSGTT--TNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            E  HP   ++  RI + L   G L+K C+    E  A+ E++ +VH++  L+ L+++  +    ++ E      F +  + R  L   RK VG  + +      K A +R   + V    HH SA +  GFC + ++++   YA  +    RV+I+D D H GNG ++ F  DS V  + +       F P   P+DY +      + + V    SG     NEY       +    + F+P+LV+ +AG D
Sbjct:  443 EDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKE--FNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFD 691          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAW (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MW2) GN=acuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L +   L    IV+P  A+ ++L+++H   Y+++++ + +  II E        N     +  +  R     VGG +  A L    G  +N   +GGG HH       GFC Y DI++   Y   + N  RV+IID DAH G+G +  F +D+ V    +   G  ++P    +  + ++  ++  G T N  L+   E           +E    +F P++++   G DI
Sbjct:   25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAS (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MSSA476) GN=acuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L +   L    IV+P  A+ ++L+++H   Y+++++ + +  II E        N     +  +  R     VGG +  A L    G  +N   +GGG HH       GFC Y DI++   Y   + N  RV+IID DAH G+G +  F +D+ V    +   G  ++P    +  + ++  ++  G T N  L+   E           +E    +F P++++   G DI
Sbjct:   25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: Y1194_METTH (Uncharacterized protein MTH_1194 OS=Methanobacterium thermoautotrophicum GN=MTH_1194 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 67/256 (26.17%), Postives = 114/256 (44.53%), Query Frame = 2
Query:   20 LIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGG-FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRD-YEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            +I+SP Y+   L   + H  +S +   I + + S     +   VEP  A  +D+L+VHS ++++ L+      +        L  +  +  +     R   GG +LAA+ A   GW+ ++G    HH + D   GFC + +I++ I +A   L +SR +++D D H GNG    F  D  V  + +      PR  +    FID+            + +  G+   EYL  L   L      F P+++  +AG D
Sbjct:    3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSSTHVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSLGRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQD---PRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWILGMILPAVLEGFRPDMIFVSAGFD 244          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAC (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain COL) GN=acuC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L +   L    IV+P  A+ ++L+++H   Y+++++ + +  II E        N     +  +  R     VGG +  A L    G  +N   +GGG HH       GFC Y DI++   Y   + N  RV+IID DAH G+G +  F +D+ V    +   G  ++P    +  + ++  ++  G T N  L+   E           +E    +F P++++   G DI
Sbjct:   25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAN (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain N315) GN=acuC PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L +   L    IV+P  A+ ++L+++H   Y+++++ + +  II E        N     +  +  R     VGG +  A L    G  +N   +GGG HH       GFC Y DI++   Y   + N  RV+IID DAH G+G +  F +D+ V    +   G  ++P    +  + ++  ++  G T N  L+   E           +E    +F P++++   G DI
Sbjct:   25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAM (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L +   L    IV+P  A+ ++L+++H   Y+++++ + +  II E        N     +  +  R     VGG +  A L    G  +N   +GGG HH       GFC Y DI++   Y   + N  RV+IID DAH G+G +  F +D+ V    +   G  ++P    +  + ++  ++  G T N  L+   E           +E    +F P++++   G DI
Sbjct:   25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263          
The following BLAST results are available for this feature:
BLAST of CF832478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HDAC8_MOUSE3.166e-1426.54Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=... [more]
ACUC_STAAR3.166e-1426.12Acetoin utilization protein acuC OS=Staphylococcus... [more]
HDAC8_DANRE4.135e-1426.56Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2... [more]
HDA6_CAEEL7.053e-1427.38Histone deacetylase 6 OS=Caenorhabditis elegans GN... [more]
ACUC_STAAW1.571e-1325.71Acetoin utilization protein acuC OS=Staphylococcus... [more]
ACUC_STAAS1.571e-1325.71Acetoin utilization protein acuC OS=Staphylococcus... [more]
Y1194_METTH2.052e-1326.17Uncharacterized protein MTH_1194 OS=Methanobacteri... [more]
ACUC_STAAC2.052e-1325.71Acetoin utilization protein acuC OS=Staphylococcus... [more]
ACUC_STAAN2.680e-1325.71Acetoin utilization protein acuC OS=Staphylococcus... [more]
ACUC_STAAM2.680e-1325.71Acetoin utilization protein acuC OS=Staphylococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832478 ID=CF832478; Name=CF832478; organism=Citrus sinensis; type=EST; length=753bp
TTCCTATCTTCCGCTCCCTCTGATATACTCGCCTGACTACAATATTTCGT
TTCTTGGCATAGAGAAGCTGCACCCATTTGATTCTTCCAAATGGGGTCGC
ATTTGCCAGTTCCTTAGCTCTGAGGGTTTTCTGGATAAAAATTGTATCGT
TGAGCCACTAGAAGCTTCCAAGGAAGATCTGCTTGTGGTTCATTCAGAAT
CATATTTGAAGAGTCTACAGAGCAGTCCAAATGTTTCCATTATAATTGAG
GTGCCTCCTGTTGCACTATTTCCCAATTGTCTTGTGCAGAGGAAAGTTCT
TTATCCATTTCGCAAGCAGGTGGGTGGAACCATATTGGCAGCTAAGCTTG
CAAAAGAGCGAGGGTGGGCCATTAATGTTGGAGGAGGATTCCATCACTGC
TCTGCTGATGAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCTCTTTG
CATACATTATGCCTTTGTTCAACTAAATATATCAAGGGTCATGATAATTG
ATCTTGATGCACATCAAGGAAATGGTCACGAGAAGGACTTTTCCAGTGAC
AGTCGTGTTTATATTCTGGATATGTTTAACCCTGGAATTTATCCTCGGGA
CTATGAGGCAAGACGTTTTATTGATCAGAAGGTCGAAGTAGTGAGTGGGA
CAACAACAAATGAGTACTTAAAGAAATTAGATGAAGCACTTGAGGTTGCT
GGTCATACGTTTGATCCTGAGCTGGTGATTTACAATGCCGGCACTGATAT
CCT
back to top