CF832478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14 Identity = 69/260 (26.54%), Postives = 110/260 (42.31%), Query Frame = 2 Query: 8 LPLPLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 LP IYSP+Y + K+ + + + + + IV+P AS E++ H+++YL+ LQ S + L +C + GGTI AA+ + AIN GG+HH DE GFC D L I ++ R++ +DLD H G+G E FS S+V + + F+PG +P + R+ V + G +Y + L+ F+P+ V+ G D Sbjct: 14 LPPVYIYSPEYVSICDSLVKV----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAR (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MRSA252) GN=acuC PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14 Identity = 64/245 (26.12%), Postives = 112/245 (45.71%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751 HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E + N + + R VGG + A L G A+N +GGG HH GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G ++P + + ++ ++ G T N L+ E +E +F P++++ G DI Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPVVKSFKPDIILSVNGVDI 263
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14 Identity = 68/256 (26.56%), Postives = 112/256 (43.75%), Query Frame = 2 Query: 23 IYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 +YSP+Y + + K+ ++ + + + G L +V+P AS E++ V H++SYL+ L S + + L +C V + + + VGG L A L + AIN GG+HH DE G C D L I ++ RV+ +D+D H G+G E FS S+V + + F+PG +P + R+ V G + Y + ++ F+PE V+ G D Sbjct: 20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDSYLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDVAINWAGGWHHAKKDEASGSCYVNDAVLGI--LKLREKYDRVLYVDVDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTFTSVMQEVKALFNPEAVVMQLGAD 268
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14 Identity = 69/252 (27.38%), Postives = 116/252 (46.03%), Query Frame = 2 Query: 62 EKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVVHSESYLKSLQSSPNVS---IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM-------FNPGIYPRDY-EARRFIDQKVEV---VSGTT--TNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 E HP ++ RI + L G L+K C+ E A+ E++ +VH++ L+ L+++ + ++ E F + + R L RK VG + + K A +R + V HH SA + GFC + ++++ YA + RV+I+D D H GNG ++ F DS V + + F P P+DY + + + V SG NEY + + F+P+LV+ +AG D Sbjct: 443 EDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKE--FNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFD 691
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAW (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MW2) GN=acuC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13 Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751 HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E N + + R VGG + A L G +N +GGG HH GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G ++P + + ++ ++ G T N L+ E +E +F P++++ G DI Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAS (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MSSA476) GN=acuC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13 Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751 HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E N + + R VGG + A L G +N +GGG HH GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G ++P + + ++ ++ G T N L+ E +E +F P++++ G DI Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: Y1194_METTH (Uncharacterized protein MTH_1194 OS=Methanobacterium thermoautotrophicum GN=MTH_1194 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13 Identity = 67/256 (26.17%), Postives = 114/256 (44.53%), Query Frame = 2 Query: 20 LIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGG-FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRD-YEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 +I+SP Y+ L + H +S + I + + S + VEP A +D+L+VHS ++++ L+ + L + + + R GG +LAA+ A GW+ ++G HH + D GFC + +I++ I +A L +SR +++D D H GNG F D V + + PR + FID+ + + G+ EYL L L F P+++ +AG D Sbjct: 3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSSTHVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSLGRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQD---PRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWILGMILPAVLEGFRPDMIFVSAGFD 244
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAC (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain COL) GN=acuC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13 Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751 HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E N + + R VGG + A L G +N +GGG HH GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G ++P + + ++ ++ G T N L+ E +E +F P++++ G DI Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAN (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain N315) GN=acuC PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13 Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751 HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E N + + R VGG + A L G +N +GGG HH GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G ++P + + ++ ++ G T N L+ E +E +F P++++ G DI Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAAM (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acuC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13 Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE----------ALEVAGHTFDPELVIYNAGTDI 751 HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E N + + R VGG + A L G +N +GGG HH GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G ++P + + ++ ++ G T N L+ E +E +F P++++ G DI Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFP---GSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDI 263 The following BLAST results are available for this feature:
BLAST of CF832478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832478 ID=CF832478; Name=CF832478; organism=Citrus sinensis; type=EST; length=753bpback to top |