CF832496

Overview
NameCF832496
Unique NameCF832496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832496_ssr524 microsatellite CF832496_ssr524:524..535. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10117 contig Csv1_Contig10117:33..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 99/252 (39.29%), Postives = 127/252 (50.40%), Query Frame = 3
Query:   30 PKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            PK+      RNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SI+PGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+                             DQK+VD  ++  I+AVP L+ YL ++FS
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFS 284          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 96/243 (39.51%), Postives = 125/243 (51.44%), Query Frame = 3
Query:   57 RNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            RNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SI+PGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL ++FS
Sbjct:   55 RNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFS 286          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 75/159 (47.17%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  213 FYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            +YPA     P   ++  +PTKLRAS++PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+                             DQK+VDA L+ AI+A+P++K YL A F+
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFA 183          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.057e-27
Identity = 68/145 (46.90%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  252 KRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARF 683
            K+  +   LR SI+PGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V    +D YFA E                             DQKSVD+ ++  ++    L  YL  +F
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKF 223          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 70/146 (47.95%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  264 KPTKLRASISPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLK---AYLGARFS 686
            K   LR +++PGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q++VI TS KV++SGV + +  +D+YF ++                             D K+VDAP++ AI+  P+ K    YLG RFS
Sbjct:   63 KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRK---STAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFS 205          
The following BLAST results are available for this feature:
BLAST of CF832496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MOUSE2.586e-3339.2960S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_RAT1.676e-3239.5160S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_SCHPO1.201e-3047.1760S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_DICDI8.057e-2746.9060S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_CAEEL1.163e-2547.9560S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832496 ID=CF832496; Name=CF832496; organism=Citrus sinensis; type=EST; length=688bp
GCCTTCAAAAGCGGGTAGCATCAATGGCGCCGAAGCAAGGGACCCTAAGA
GTGATCAGGAATCCGGAGCTGATCCGAGGAATTGGAAAGTTCTCTCGTTC
AAAGATGTACCATAAGAGGGGTCTCTGGGCAATTAAAGCCAAAAACGGTG
GCGTCTTTCCTCGTCACGACCCCAAGCCCAAAGCCGCTGCTCCCGCCGAG
AAGCCCCCCAAGTTTTACCCCGCCGATGACGTCAAGAAACCACTCGTCAA
CAAGCGCAAGCCTAAACCCACCAAACTTAGAGCAAGCATCTCCCCAGGGA
CAGTGCTGATTATACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTC
CTGAAGCAGCTTCCATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAGAT
CAATGGTGTTCCTTTACGACGTGTGAACCAGTCTTACGTGATTGGAACTT
CTACCAAAGTTGATATCTCCGGAGTGAATGTGGATAAGTTTGATGATAAG
TATTTTGCCAAGGAAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTT
CTTTGAGTCAGAGAAAGAGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGG
ATGATCAGAAGTCTGTTGATGCACCATTGATCAAGGCCATTGAAGCTGTT
CCAGACTTGAAGGCTTACCTTGGTGCTAGGTTTTCCCT
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