CF832519

Overview
NameCF832519
Unique NameCF832519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2855 contig Csv1_Contig2855:49..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   52 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR 309
            MGTLG+AI++VG  IR T QA  R+G  LQG+++ ++ LSRHRTL+ +             AP+AS+IGDVQ+ +GS I Y  V R
Sbjct:    1 MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRHRTLITV-------------APNASVIGDVQINKGSFISYASVSR 73
The following BLAST results are available for this feature:
BLAST of CF832519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UMP6_ARATH7.444e-1347.67Uncharacterized protein At1g47420, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832519 ID=CF832519; Name=CF832519; organism=Citrus sinensis; type=EST; length=862bp
GGCCCCTTCTCTGTAATCGAAGATCTTTGATTTGATTCTGAGCTGACAGC
GATGGGAACGCTGGGGAAAGCAATATACAGCGTTGGATTCTGGATCCGTG
AAACCGGTCAAGCCCTTGATCGTCTCGGTTGCCGCCTCCAAGGCAACTAC
TACTTCCAAGAACAGCTCTCCAGGCATCGAACACTCATGAACATTTTTGA
CAAAGCTCCTGTTGTTAACAAGGATGTATTTTTGGCTCCTAGTGCATCTA
TCATTGGTGATGTTCAGGTGGGCCGAGGTTCTTCCATTTGGTATGGATGT
GTTTTGAGAGGTGATGTTAACAGCATCAGCATTGGATCAGGAACCAATAT
ACAAGACAATTCCCTTGTTCATGTGGCAAAATCAAATTTAGCTGGGAAGG
TTTTACCTACTATCATTGGAGATAATGTTACTGTTGGTCACAGTGCTGTC
TTGCATGGATGTACTGTTGAGGATGAGGCTTTTGTTGGTATGGGTGCTAC
TTTGCTGGATGGTGTTTATGTTGAGAAACATGCTATGGTTGCTGCTGGAG
CTCTTGTAAGGCAGAACACAAAGATTCCATGTGGGGAGGTTTGGGGAGGT
AATCCAGCTAGGTTCCTCAGAAAGCTCACAGAAGAAGAGATGGCCTTTAT
TTCCCAGTCAGCCATAAATTATTCCAATTTGGCACGGGTTCACGCAGCTG
AAAATGCGAAGAGCTTTGACGAAATTGAGTTTGAGAAGCTGCTTCGCAAG
AAATTTGCTCGTCGTGATGAGGAGTATGATTCAATGCTTGGTGTTGTTCG
CGAAACCCCTGCTGAGCTCATACTTCCTGATAACGTGATGCAAGATAAAG
TGCCAAAAACAG
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