CF832525

Overview
NameCF832525
Unique NameCF832525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.134e-49
Identity = 95/194 (48.97%), Postives = 136/194 (70.10%), Query Frame = -1
Query:  257 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 838
            A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LDPAL+R GRLDRKIE P P E++R  IL+IH+  +  H ++++E + +  + FNGA L+ VC EAGM A+R +   V HEDF + + ++ +AKK  S  +Y
Sbjct:  231 ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV-QAKKKASLNYY 423          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.787e-49
Identity = 95/196 (48.47%), Postives = 137/196 (69.90%), Query Frame = -1
Query:  251 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNA 838
            A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LDPAL+R GRLDRKIE P P+E++R  IL+IH+  +  + ++++E + +  + FNGA L+ VC EAGM A+R +   V HEDF + + ++   KK  SS +Y A
Sbjct:  236 ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKK--SSLNYYA 429          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.754e-49
Identity = 94/194 (48.45%), Postives = 136/194 (70.10%), Query Frame = -1
Query:  257 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 838
            A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LDPAL+R GRLDRKIE P P E++R  IL+IH+  +  + ++++E + +  + FNGA L+ VC EAGM A+R +   V HEDF + + ++ +AKK  S  +Y
Sbjct:  230 ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQV-QAKKKASLNYY 422          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.209e-49
Identity = 95/187 (50.80%), Postives = 132/187 (70.59%), Query Frame = -1
Query:  278 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 838
            A FL+VV S +I KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V   + F+GAD++ +CTEAG+ A+R  R  V H DF KA  K+   KK
Sbjct:  248 ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKK 434          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.209e-49
Identity = 95/187 (50.80%), Postives = 132/187 (70.59%), Query Frame = -1
Query:  278 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 838
            A FL+VV S +I KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V   + F+GAD++ +CTEAG+ A+R  R  V H DF KA  K+   KK
Sbjct:  248 ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKK 434          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.109e-49
Identity = 96/180 (53.33%), Postives = 131/180 (72.78%), Query Frame = -1
Query:  293 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 832
            F++V  S ++ K+IGE AR++RE+F  AR+H P IIFMDEID+IG R    G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+LD ALLRPGR+DRKIE P PNE++R++ILKIH+  +     I+   + +L  G +GA+++ VCTEAGM A+R  R +V  EDF  AV K+
Sbjct:  206 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSR-LEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 384          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.109e-49
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = -1
Query:  305 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 838
            A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LDPAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++   +  +GAD++ +CTEAG+ A+R  R  V +EDF K+
Sbjct:  245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.109e-49
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = -1
Query:  305 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 838
            A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LDPAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++   +  +GAD++ +CTEAG+ A+R  R  V +EDF K+
Sbjct:  245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.109e-49
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = -1
Query:  305 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 838
            A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LDPAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++   +  +GAD++ +CTEAG+ A+R  R  V +EDF K+
Sbjct:  245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.109e-49
Identity = 90/187 (48.13%), Postives = 132/187 (70.59%), Query Frame = -1
Query:  278 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 838
            A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LDPAL+RPGR+DRKIE PLP+E+++  I  IH + +    +++   ++   +  +GAD++ +CTEAG+ A+R  R  V +EDF K+   +   KK
Sbjct:  244 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 430          
The following BLAST results are available for this feature:
BLAST of CF832525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
PRS6A_BRACM2.134e-4948.9726S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS6A_ORYSJ2.787e-4948.4726S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_SOLLC4.754e-4948.4526S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS4B_ARATH6.209e-4950.8026S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH6.209e-4950.8026S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS8_XENLA8.109e-4953.3326S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS4_RAT8.109e-4950.0026S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE8.109e-4950.0026S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN8.109e-4950.0026S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME8.109e-4948.1326S protease regulatory subunit 4 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832525 ID=CF832525; Name=CF832525; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTGAGAATCGGTGGAAATCACTGAAACCATCAATA
CATTAAAGATGTGCAACAATTTCTGACGTAAATGATTGTTATAATATATA
GAGCATTCCATCGCTCAAAGAACCACTAACTTCACAAATTAAAGCAAGAT
GTTTTAACAAAAATATGAAAACAATTACATCTGAAAAATAACCGCACTGC
CTCAAGATCCTTGGCTCTTTTCCTAAATGTTTTTACTCTTTTCCAAAATC
AGCATTGTAGTGAGCACTTGATTCAAGTTTCTTTGCCTCGTTCAGTTTCC
GGACAGCCTTCATAAAATCTTCGTGGATGACATAATCACGTTCAGCACGG
ATTGCCGACATTCCAGCCTCGGTGCAAACATTTCGGAGATCAGCCCCATT
AAAGCCCTCTGCAAGCTTCACAACAGCCTCATAATCAATCTCACCATGCT
TAGCAATGCCAGCAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCA
TTTGGCAATGGAATCTCAATTTTCCTATCCAGTCGCCCTGGACGAAGAAG
TGCAGGGTCAAGGACATCAGGTCTGTTAGTGGCCATTATCATTTTAACCT
TCCCAAGCTGATCAAATCCATCAAGCTGATTAAGTAACTCCATCAGTGTC
CTTTGAATTTCACGATCTGCACTGGTTCCTTCACTAAAACGGCGTCCACC
GATGGCATCAATTTCATCCATAAAAATGATGCAGGGTTGATGATCACGTG
CATATCCAAACATCTCTCTTATCAACCTTGCACTTTCCCCAATGTACTTA
TCAATAATGGCACTTGAAACCACCTTCAGAAAATTTGC
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