CF832526

Overview
NameCF832526
Unique NameCF832526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:15..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  413 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +++ +   V ++ + G  +   E+ E ++  L  P+ +  +G K PKGVLL GPPGTGKTLLA+A+A      F  +  S+ I+ ++G  A  +R++F
Sbjct:  165 LINAEKPKVRFNDMAGNEEAKEEVVEIVDF-LKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  452 VGGLSDQIREL-RESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-AIIDKYIGESARLIREMF 706
            +GGL  +   + R +    L  P +  ++GI   KG+LLYGPPGTGKTL+AR I   ++A   K+V+   I++KY+G+S   +R++F
Sbjct:  271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLF 357          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 31/67 (46.27%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  506 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            L NP+LF   G   PK VL YGPPGTGKTL+ARA+A+  +++F+ V +  +I +++G+++++IRE++
Sbjct:  143 LENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELY 206          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 37/135 (27.41%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  308 VDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIREL-RESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-AIIDKYIGESARLIREMF 706
            +++  L+  T +V + +  + ++ + +  +    N+      N+    +GGL  +  ++ R +    +  P +  R+GIK  KG+LL+GPPGTGKTL+AR I   ++    K+V+   ++ K++GE+ + +R++F
Sbjct:  170 IERGLLSKDTYIVFEASNASGIKIVNQR-EAASSNIFKHKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLF 303          
The following BLAST results are available for this feature:
BLAST of CF832526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
FTSH_HELFE3.870e-1134.69Cell division protease ftsH homolog OS=Helicobacte... [more]
SEC18_SCHPO6.601e-1140.23Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
PRS2_METJA6.601e-1146.27Putative 26S protease regulatory subunit homolog M... [more]
NSF_ARATH6.601e-1127.41Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832526 ID=CF832526; Name=CF832526; organism=Citrus sinensis; type=EST; length=712bp
TTGATTTGCTCCCTTAATATCTCCGACTGCAACGATGAGCGAAGGAGAAG
ACCCCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTC
CAGCACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAG
AGCTGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTC
AAAGTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAA
CGCTTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCG
CAGCAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTG
ATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCG
GTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGC
TGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGC
TACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCC
AAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGC
ACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAA
GTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAG
ATGTTTGGATAT
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