CF832526

Overview
NameCF832526
Unique NameCF832526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:15..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 87/207 (42.03%), Postives = 137/207 (66.18%), Query Frame = 2
Query:  110 EIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            E+ES+V  +        +EN++  KKE    + +L  L+    I+G VL  ++  + +VK+S+GP ++V     V+ + +  G RV L+  TL ++  LP+E D     M  E+  ++ +  +GGL++QIR+++E +ELPL NPELF +VGI PPKGVLLYGPPGTGKTLLA+A+A   +A+F++VV S ++ K+IGE A+L+R++F
Sbjct:   29 ELESKVLRLELKNKDITRENVQI-KKENEILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVF 234          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 235          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 235          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 235          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 85/207 (41.06%), Postives = 133/207 (64.25%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV++P+D ++++VK     ++VV     VD   +T+  RV L   + T+ + LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + +  F++V  S ++ K+IGE +R++RE+F
Sbjct:   25 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 231          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 235          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 235          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.326e-40
Identity = 90/214 (42.06%), Postives = 129/214 (60.28%), Query Frame = 2
Query:   89 KKLLQHKEIESRVRSVKE----NLRAAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            K  LQH +   R++  K      L A + E N       ++L+ LQ  G  +GEV++ +   +++VK     +YVV     +D  KLT  TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F
Sbjct:   34 KYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELF 247          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.038e-40
Identity = 89/211 (42.18%), Postives = 130/211 (61.61%), Query Frame = 2
Query:   98 LQH-KEIESRVRSVKENLR---AAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            LQH  E++ ++R    NL    A + E N       ++L+ LQ  G  +GEV++ +   +++VK     +YVV     +D  K+T  TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F
Sbjct:   37 LQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELF 247          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 84/207 (40.58%), Postives = 132/207 (63.77%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV++P+D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + +  F++V  S ++ K+IGE +R++RE+F
Sbjct:   28 EELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 234          
The following BLAST results are available for this feature:
BLAST of CF832526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
PSMR_METVS1.364e-4042.03Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS8_RAT1.364e-4041.0626S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.364e-4041.0626S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.364e-4041.0626S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_MANSE1.364e-4041.0626S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_HUMAN1.364e-4041.0626S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.364e-4041.0626S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8B_ARATH2.326e-4042.0626S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH3.038e-4042.1826S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS8_DROME3.968e-4040.5826S protease regulatory subunit 8 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832526 ID=CF832526; Name=CF832526; organism=Citrus sinensis; type=EST; length=712bp
TTGATTTGCTCCCTTAATATCTCCGACTGCAACGATGAGCGAAGGAGAAG
ACCCCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTC
CAGCACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAG
AGCTGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTC
AAAGTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAA
CGCTTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCG
CAGCAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTG
ATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCG
GTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGC
TGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGC
TACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCC
AAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGC
ACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAA
GTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAG
ATGTTTGGATAT
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