CF832526

Overview
NameCF832526
Unique NameCF832526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:15..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 85/204 (41.67%), Postives = 129/204 (63.24%), Query Frame = 2
Query:   95 LLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            LL  +E  +    +K     A+++ +K +D    L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F
Sbjct:   75 LLMEEEFVANQERLKPQEEKAEEDRSKVDD----LRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELF 274          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 85/204 (41.67%), Postives = 129/204 (63.24%), Query Frame = 2
Query:   95 LLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            LL  +E  +    +K     A+++ +K +D    L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F
Sbjct:   75 LLMEEEFVANQERLKPQEEKAEEDRSKVDD----LRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELF 274          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 83/207 (40.10%), Postives = 130/207 (62.80%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE F  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F
Sbjct:   24 EDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 230          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 87/207 (42.03%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  107 KEIESRVRSVKENLR---AAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E+E +V    ++LR   A + E N      +++L+ L + G  + EV++ +   +++VK +   ++VV     VD  KLT  TR  L   + T+ R LP ++DP+V  M  E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F
Sbjct:   25 EELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELF 231          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 90/225 (40.00%), Postives = 139/225 (61.78%), Query Frame = 2
Query:   68 NAMTEYRKKLLQHK----EIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            N   +  K+ LQ K    E+ESR+  +        +ENL+  K E      +L  ++    I+G V+  +   +++VK+S+GP ++V     V+ + L  G RV L+  TLT++  LP   D     M  ++  NV Y  +GGL  Q++E+RE +ELPL +PELF +VGI+PPKG+LLYGPPGTGKTLLA+A+A+  +A F++VV S ++ K+IGE A L++++F
Sbjct:   33 NLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMK-ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIF 256          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 80/207 (38.65%), Postives = 136/207 (65.70%), Query Frame = 2
Query:   89 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            K+L +H E I+ +   +K+  R+ K+E  + ++++K +QSV  +IG+ +  +D    IV++S+G  YVV   S +D+EKL   + V L   +  ++  LP E D  +  +   +  +V+Y+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  A+F++V  S  + KY+GE  R++R++F
Sbjct:   46 KRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVF 252          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 77/191 (40.31%), Postives = 127/191 (66.49%), Query Frame = 2
Query:  134 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +KE+ ++ K+E  + ++++K +QSV  +IG+ L  +D    IV +++G  YVV   S +D+E L     V L   +  ++  LP E D  +  +  ++  +VSY+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  ANF++VV S  + KY+GE  R++R++F
Sbjct:   30 IKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVF 220          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 81/198 (40.91%), Postives = 125/198 (63.13%), Query Frame = 2
Query:  113 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E    + +E LR  + +  +    +  L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GI+PPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F
Sbjct:   82 MEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELF 279          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 81/207 (39.13%), Postives = 132/207 (63.77%), Query Frame = 2
Query:  107 KEIESRVRSVKENLRAAKKEFNKT-------EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +E E ++RS  EN+R  + + N         +D+L+ LQ  G  +GEV++ + +++++VK     +Y+V     ++ + L +  RV L   +  + + L  + DP+V  M+ E   + +Y  VGGL+ QI+E++E IELP+ +PELF  +GI  PKGV+LYGPPGTGKTLLARA+A + D  F++V  + ++ KYIGE +R++RE+F
Sbjct:   28 QETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELF 234          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 79/219 (36.07%), Postives = 134/219 (61.19%), Query Frame = 2
Query:   50 DPVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            D +   +  T+Y+K     + +E +   +K+  R  KKE+   ++++K +QSV  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  ++  +V YS +GG+  Q +E+RE++ELPL + EL+ ++GI+PP+GVL+YGPPG GKT+LA A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   30 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 248          
The following BLAST results are available for this feature:
BLAST of CF832526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
PRS4B_ARATH1.508e-3941.6726S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH1.508e-3941.6726S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS8_XENLA1.969e-3940.1026S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_DICDI1.969e-3942.0326S protease regulatory subunit 8 OS=Dictyostelium... [more]
PSMR_METJA2.572e-3940.00Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS6B_ASPNG2.572e-3938.6526S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_SCHPO3.359e-3940.3126S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS4_ORYSJ3.359e-3940.9126S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS8_YEAST4.387e-3939.1326S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS6B_MANSE7.483e-3936.0726S protease regulatory subunit 6B OS=Manduca sext... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832526 ID=CF832526; Name=CF832526; organism=Citrus sinensis; type=EST; length=712bp
TTGATTTGCTCCCTTAATATCTCCGACTGCAACGATGAGCGAAGGAGAAG
ACCCCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTC
CAGCACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAG
AGCTGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTC
AAAGTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAA
CGCTTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCG
CAGCAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTG
ATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCG
GTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGC
TGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGC
TACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCC
AAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGC
ACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAA
GTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAG
ATGTTTGGATAT
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