CF832526

Overview
NameCF832526
Unique NameCF832526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:15..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 86/233 (36.91%), Postives = 141/233 (60.52%), Query Frame = 2
Query:   11 PLISPTATMSEGEDPVRRRNAMTEYRKKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            P  S T   S+GED +  R       K L +  E IE +   VK+ L+  ++E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V LD  +  ++  LP E D  +  +   +  +V+Y+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   20 PETSITDVPSDGEDDLYAR------LKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 246          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 83/220 (37.73%), Postives = 134/220 (60.91%), Query Frame = 2
Query:   68 NAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            N +  Y +K+   ++ E  +    +NLR  + + N          ++++ LQ  G  +GEV++ +   +++VK     +YVV     +D +++    RV L   +  +++ LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKG+LLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F
Sbjct:   15 NIVQYYTQKI---QDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELF 231          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 77/221 (34.84%), Postives = 134/221 (60.63%), Query Frame = 2
Query:   44 GEDPVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            G +P    +  + Y+K   + + +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 251          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 77/221 (34.84%), Postives = 134/221 (60.63%), Query Frame = 2
Query:   44 GEDPVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            G +P    +  + Y+K   + + +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 251          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 77/221 (34.84%), Postives = 134/221 (60.63%), Query Frame = 2
Query:   44 GEDPVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            G +P    +  + Y+K   + + +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 251          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 79/208 (37.98%), Postives = 132/208 (63.46%), Query Frame = 2
Query:   83 YRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            Y++   + + +E R   V++ +   K+E   + ++L  ++SV  I+G+ L P+D+   IV +++G  +VV   S VD+E L   T V L   +  I+  LP EVD  +  M   +  +V+Y  VGGL  Q +E++E++ELPL+  +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  A F++V  S  + KY+GE  R++R++F
Sbjct:   13 YKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVF 220          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 77/221 (34.84%), Postives = 134/221 (60.63%), Query Frame = 2
Query:   44 GEDPVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            G +P    +  + Y+K   + + +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 251          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 84/206 (40.78%), Postives = 128/206 (62.14%), Query Frame = 2
Query:   89 KKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            +++  H  +E    S  E L+  +K+  + +  L+ ++     IG +   +D++  IV + + P Y V   S VDKE L  G  V+L   T++I+  L  + DP+V  M  +     SYS +GGL  QI+E++ES+ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  RL R++F
Sbjct:   63 ERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIF 268          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 80/176 (45.45%), Postives = 117/176 (66.48%), Query Frame = 2
Query:  179 EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            E  ++ L+     +G +   +D+   IV ++ GP + V   S VDK KL  G  V+L+  TL+++  +  EVDP+V  M  E     SYS +GGL  Q++E++E+IELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F
Sbjct:   95 EKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 270          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.843e-37
Identity = 76/221 (34.39%), Postives = 133/221 (60.18%), Query Frame = 2
Query:   44 GEDPVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            G +P    +  + Y+K   + + +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP   D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F
Sbjct:   31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 251          
The following BLAST results are available for this feature:
BLAST of CF832526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
PRS6B_SOLTU1.667e-3836.9126S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS8_SCHPO2.177e-3837.7326S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS6B_RAT3.714e-3834.8426S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA3.714e-3834.8426S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN3.714e-3834.8426S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_ENCCU3.714e-3837.9826S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS6B_BOVIN3.714e-3834.8426S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS4_YEAST3.714e-3840.7826S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_DICDI3.714e-3845.4526S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS6B_MOUSE1.843e-3734.3926S protease regulatory subunit 6B OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832526 ID=CF832526; Name=CF832526; organism=Citrus sinensis; type=EST; length=712bp
TTGATTTGCTCCCTTAATATCTCCGACTGCAACGATGAGCGAAGGAGAAG
ACCCCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTC
CAGCACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAG
AGCTGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTC
AAAGTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAA
CGCTTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCG
CAGCAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTG
ATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCG
GTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGC
TGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGC
TACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCC
AAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGC
ACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAA
GTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAG
ATGTTTGGATAT
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