CF832526

Overview
NameCF832526
Unique NameCF832526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:15..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 81/241 (33.61%), Postives = 135/241 (56.02%), Query Frame = 2
Query:   23 PTATMSEGEDPVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            P  ++ EG+  + +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F
Sbjct:   21 PIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 2
Query:  281 RYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++VV    +V    +  G RV  D     I   LP ++DP V  M  E+  +V+Y  VGG  +QI  LRE +ELPL++PE F+++GI PPKG++LYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F
Sbjct:  124 KFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF 265          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  242 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++ + +V      +YVVG   K     + +G RV +D     I   LP ++DP V  M  E+  + +YS +GG  +QI ++RE +ELP+++PE F+R+GI PPKGVL YGPPG+GKTL+ARA+A+   A F++VV S ++ KYIGE AR++RE+F
Sbjct:  137 EDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELF 291          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  242 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F
Sbjct:  107 EDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  242 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F
Sbjct:  107 EDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  242 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F
Sbjct:  107 EDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  242 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F
Sbjct:  107 EDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.236e-33
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 2
Query:  242 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL ARA+A+  DA F+ V+ S ++ KY+GE AR++RE+F
Sbjct:  107 EDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELF 261          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 75/229 (32.75%), Postives = 138/229 (60.26%), Query Frame = 2
Query:   23 PTATMSEGEDPVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            PT  +     P  R NA+ ++   ++  + E+++++  V+      ++E N+ + + ++L++    +  V    ++   ++K     + V+   S    + L  G RV ++  + ++ R L  E D     M  ++  +V+Y+ +GGL DQ+RE+RE++E PL+NPE F  VG++PP GVLL+GPPGTGKT+LA+A+A+  DA+F+K+  S ++ K+IGE +RL+R++F
Sbjct:   11 PTLDVDPESTPAERLNALQDHYVDIVAVNGELQAQLDDVEARREELREEVNRLQRENETLKTASLYLATVEDLPEDGSAVIKQHGNNQEVLTELSPRLADTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLF 238          
BLAST of CF832526 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.013e-33
Identity = 66/154 (42.86%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  245 NERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 706
            N + I+      ++VV    K+    +  G RV +D     I   LP ++D  V  M  E+  +++Y  VGG  +QI +LRE +E+PL++PE F+ +GI PPKGVL+YGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++R++F
Sbjct:  103 NAKYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLF 256          
The following BLAST results are available for this feature:
BLAST of CF832526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
PRS7_XENLA4.249e-3433.6126S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_SCHPO4.249e-3447.1826S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS7B_ARATH4.249e-3444.5226S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS7_MOUSE5.549e-3444.5226S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA5.549e-3444.5226S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN5.549e-3444.5226S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN5.549e-3444.5226S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS7_RAT1.236e-3344.5226S protease regulatory subunit 7 OS=Rattus norveg... [more]
PSMR1_HALSA4.698e-3332.75Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS7_DICDI8.013e-3342.8626S protease regulatory subunit 7 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832526 ID=CF832526; Name=CF832526; organism=Citrus sinensis; type=EST; length=712bp
TTGATTTGCTCCCTTAATATCTCCGACTGCAACGATGAGCGAAGGAGAAG
ACCCCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTC
CAGCACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAG
AGCTGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTC
AAAGTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAA
CGCTTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCG
CAGCAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTG
ATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCG
GTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGC
TGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGC
TACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCC
AAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGC
ACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAA
GTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAG
ATGTTTGGATAT
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