CF832531

Overview
NameCF832531
Unique NameCF832531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:27..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.006e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -1
Query:  374 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 565
            V+ IRC+NC +C P DKAIK+F++RNIVE AAVRD+ E  V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   18 VQPIRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.545e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = -1
Query:  374 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 562
            KF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  Y +PK+Y K+QYCVSCAIH+
Sbjct:   19 KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHA 81          
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  374 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 565
            VK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:   18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  374 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 565
            VK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:   18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  371 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD--GYTLPKLYAKMQYCVSCAIHSH 565
            V +IRC+NC +C PKDKA+KRF +R IVE AAV+D+ +  V++  GY  P+ Y K QYC+SCAIHSH
Sbjct:   18 VPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSH 84          
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = -1
Query:  374 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY--DGYTLPKLYAKMQYCVSCAIHS 556
            +RC+NCG+   KDKAIKRF  RN+V+ ++ RD+QE   Y    +T+PK+Y K+ YCVSCAIH+
Sbjct:   21 VRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHA 83          
BLAST of CF832531 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  374 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 556
            I+C  CG   PKDKAIKRF +++++EQA+  D+++A +YD + +P++  K Q+CVSCA H+
Sbjct:   18 IQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHA 78          
The following BLAST results are available for this feature:
BLAST of CF832531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26L_HUMAN3.006e-2067.19Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26A_SCHPO2.545e-1963.4940S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26B_YEAST2.154e-1867.1940S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST2.154e-1867.1940S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_DICDI3.675e-1858.2140S ribosomal protein S26 OS=Dictyostelium discoid... [more]
RS26_OXYNO3.219e-1453.9740S ribosomal protein S26 OS=Oxytricha nova GN=RPS... [more]
RS26_ENCCU1.036e-1247.5440S ribosomal protein S26 OS=Encephalitozoon cunic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02A04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832531 ID=CF832531; Name=CF832531; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTACTTCAATCACTCCATCAAAATTCTCTACGGTT
TTGATTCAAACTTGTGACAGTAAACAGTTCTCTGATGCACGACAACAAAA
CACAAAACTAACATAAAAGTTTGCAGTGCTCTAATTAAACAGACCCACAT
ATCTGATACCACCACATAAAAATCTCAAAAGCCTCAAAGGACCAGAAGCA
CCGACAGCAGAAAGCTTTCAAGCACGAGCAGCAGCTGGAGCTCCAGCTGG
ACCACCAGCACGTGGGCCTTGACCAAGAGCACCACCAGCCTTTGGCACAT
CATCCCTGCGCCTGAAGCGTTGTGGGGGCTCACGGATCCTCCTGTTAGTA
CGGGAACGAACTCTCACCACATGAGAGTGGATCGCACACGAGACGCAGTA
CTGCATCTTAGCATATAACTTAGGAAGAGTGTAACCGTCATAAACACACG
CCTCCTGAACATCCCTAACAGCAGCTTGCTCAACAATGTTCCTCACCAAA
AACCTCTTAATCGCCTTGTCCTTAGGGCAGCATTTGCCGCAGTTAGAGCA
GCGGATGAACTTGACATGGCCACGGCCGTGCTTGTTCCTTCCTCCGTTCC
TCCGCTTGAACGTCATTTTCTTGTTATTTTTGTTGCGCCGCTGCTGCTTG
TT
back to top